MAKER v3 ERROR: Failed while processing all repeats
I am using MAKER v3 to update community annotation with new RNA-seq evidence data. Part of my problem is that MAKER shows below error when repeat masking. I have attached the community annotation gff, maker log and maker_opts.ctl for your reference. I searched for this error in the maker-dev google group and found some hints to update BLAST to 2.7, rmblast to 2.6 and reconfigure RepeatMasker which I did but it still fails with the error. Any help appreciated.
collecting blastx repeatmasking
processing all repeats
Died at /mnt/grid/ware/hpc/home/data/mcampbel/applications/maker/bin/../lib/Bio/Search/Hit/PhatHit/Base.pm line 188.