More chado install oddities

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More chado install oddities

Karl O. Pinc
Hi,

The INSTALL.Chado (1.23, not head) says
that cpan install Bundle::GMOD' will
install Bio::Chado::Schema, but it didn't
for me.

perl Makefile.PL then warns that
Bio::Chado::Schema is not installed.

So, I'm installing it manually.

Note that this seems to require a c
compiler to support the required
sqlite requirements.

The result of trying to install
Bio::Chado::Schema is this:

make: *** [test_dynamic] Error 2
  RBUELS/Bio-Chado-Schema-0.20000.tar.gz
2 dependencies missing (SQL::Translator,DBIx::Class::Tree::NestedSet);
additionally test harness failed
  /usr/bin/make test -- NOT OK
//hint// to see the cpan-testers results for installing this module,
try:
  reports RBUELS/Bio-Chado-Schema-0.20000.tar.gz
Running make install
  make test had returned bad status, won't install without force
Failed during this command:
 FREW/SQL-Translator-0.11018.tar.gz           : make_test NO
 JROCKWAY/DBICx-TestDatabase-0.05.tar.gz      : make_test NO one
dependency not OK (SQL::Translator); additionally test harness failed
 ICYDEE/DBIx-Class-Tree-NestedSet-0.10.tar.gz : make_test NO one
dependency not OK (DBICx::TestDatabase); additionally test harness
failed
 RBUELS/Bio-Chado-Schema-0.20000.tar.gz       : make_test NO 2
dependencies missing (SQL::Translator,DBIx::Class::Tree::NestedSet);
additionally test harness failed

I will continue to poke it with a stick.

Regards,

Karl <[hidden email]>
Free Software:  "You don't pay back, you pay forward."
                 -- Robert A. Heinlein

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Re: More chado install oddities

Scott Cain
Hi Rob,

Can you offer a comment on this?

Thanks,
Scott



On Mon, Feb 17, 2014 at 10:53 AM, Karl O. Pinc <[hidden email]> wrote:
Hi,

The INSTALL.Chado (1.23, not head) says
that cpan install Bundle::GMOD' will
install Bio::Chado::Schema, but it didn't
for me.

perl Makefile.PL then warns that
Bio::Chado::Schema is not installed.

So, I'm installing it manually.

Note that this seems to require a c
compiler to support the required
sqlite requirements.

The result of trying to install
Bio::Chado::Schema is this:

make: *** [test_dynamic] Error 2
  RBUELS/Bio-Chado-Schema-0.20000.tar.gz
2 dependencies missing (SQL::Translator,DBIx::Class::Tree::NestedSet);
additionally test harness failed
  /usr/bin/make test -- NOT OK
//hint// to see the cpan-testers results for installing this module,
try:
  reports RBUELS/Bio-Chado-Schema-0.20000.tar.gz
Running make install
  make test had returned bad status, won't install without force
Failed during this command:
 FREW/SQL-Translator-0.11018.tar.gz           : make_test NO
 JROCKWAY/DBICx-TestDatabase-0.05.tar.gz      : make_test NO one
dependency not OK (SQL::Translator); additionally test harness failed
 ICYDEE/DBIx-Class-Tree-NestedSet-0.10.tar.gz : make_test NO one
dependency not OK (DBICx::TestDatabase); additionally test harness
failed
 RBUELS/Bio-Chado-Schema-0.20000.tar.gz       : make_test NO 2
dependencies missing (SQL::Translator,DBIx::Class::Tree::NestedSet);
additionally test harness failed

I will continue to poke it with a stick.

Regards,

Karl <[hidden email]>
Free Software:  "You don't pay back, you pay forward."
                 -- Robert A. Heinlein

------------------------------------------------------------------------------
Managing the Performance of Cloud-Based Applications
Take advantage of what the Cloud has to offer - Avoid Common Pitfalls.
Read the Whitepaper.
http://pubads.g.doubleclick.net/gampad/clk?id=121054471&iu=/4140/ostg.clktrk
_______________________________________________
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--
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Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

------------------------------------------------------------------------------
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Take advantage of what the Cloud has to offer - Avoid Common Pitfalls.
Read the Whitepaper.
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_______________________________________________
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