Moving Chado svn repository to github

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Moving Chado svn repository to github

Scott Cain
Hi all,

I'm thinking about moving the Chado svn repository to Github; I had some issues with the SourceForge repository over the last few weeks so I think the time to move is on us.  I won't do the move until next week at the earliest, but I wanted to give everybody time to think it over and make any commits that are sitting around.

Please let me know if you'd rather I didn't do this, and if so, preferably some well-thought out reason why not :-)

Thanks,
Scott


--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

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Re: [Gmod-schema] Moving Chado svn repository to github

Peter Cock
On Mon, Aug 19, 2013 at 5:54 PM, Scott Cain <[hidden email]> wrote:

> Hi all,
>
> I'm thinking about moving the Chado svn repository to Github; I had some
> issues with the SourceForge repository over the last few weeks so I think
> the time to move is on us.  I won't do the move until next week at the
> earliest, but I wanted to give everybody time to think it over and make any
> commits that are sitting around.
>
> Please let me know if you'd rather I didn't do this, and if so, preferably
> some well-thought out reason why not :-)
>
> Thanks,
> Scott

I've overall been very happy with GitHub.com, although from time
to time it has been unavailable - largely due to DDOS attacks -
the GitHub team are very good at providing status updates, e.g.
on Twitter via @GitHubStatus

You might also consider BitBucket.org which now also supports
git repositories (as well as mercurial/hg).

One potential downside (to either of these hosts) is you will
not get download counts or clone counts. If you use those
figures at the moment as a proxy for your user base size
this could be important.

Also make sure you are happy with the different GitHub
support for downloads - you can't just upload a bunch
of compiled packages like you can at SourceForge:
https://github.com/blog/1302-goodbye-uploads

I hope that is helpful,

Regards,

Peter

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Re: [Gmod-schema] Moving Chado svn repository to github

Scott Cain
Hi Peter,

I wasn't aware of the downloads issues, but since out wiki already points at SourceForge for package downloads, I guess I can just keep using it for that.  

While I will take a look at BitBucket, I'm leaning heavily towards GitHub since that is where the GBrowse, Bio::Graphics and JBrowse repositories are currently housed.

Scott



On Mon, Aug 19, 2013 at 1:01 PM, Peter Cock <[hidden email]> wrote:
On Mon, Aug 19, 2013 at 5:54 PM, Scott Cain <[hidden email]> wrote:
> Hi all,
>
> I'm thinking about moving the Chado svn repository to Github; I had some
> issues with the SourceForge repository over the last few weeks so I think
> the time to move is on us.  I won't do the move until next week at the
> earliest, but I wanted to give everybody time to think it over and make any
> commits that are sitting around.
>
> Please let me know if you'd rather I didn't do this, and if so, preferably
> some well-thought out reason why not :-)
>
> Thanks,
> Scott

I've overall been very happy with GitHub.com, although from time
to time it has been unavailable - largely due to DDOS attacks -
the GitHub team are very good at providing status updates, e.g.
on Twitter via @GitHubStatus

You might also consider BitBucket.org which now also supports
git repositories (as well as mercurial/hg).

One potential downside (to either of these hosts) is you will
not get download counts or clone counts. If you use those
figures at the moment as a proxy for your user base size
this could be important.

Also make sure you are happy with the different GitHub
support for downloads - you can't just upload a bunch
of compiled packages like you can at SourceForge:
https://github.com/blog/1302-goodbye-uploads

I hope that is helpful,

Regards,

Peter



--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

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analysis and resources for efficient Application Performance Management.
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Re: [Gmod-schema] Moving Chado svn repository to github

Fields, Christopher J
In reply to this post by Peter Cock
On Aug 19, 2013, at 12:01 PM, Peter Cock <[hidden email]>
 wrote:

> On Mon, Aug 19, 2013 at 5:54 PM, Scott Cain <[hidden email]> wrote:
>> Hi all,
>>
>> I'm thinking about moving the Chado svn repository to Github; I had some
>> issues with the SourceForge repository over the last few weeks so I think
>> the time to move is on us.  I won't do the move until next week at the
>> earliest, but I wanted to give everybody time to think it over and make any
>> commits that are sitting around.
>>
>> Please let me know if you'd rather I didn't do this, and if so, preferably
>> some well-thought out reason why not :-)
>>
>> Thanks,
>> Scott
>
> I've overall been very happy with GitHub.com, although from time
> to time it has been unavailable - largely due to DDOS attacks -
> the GitHub team are very good at providing status updates, e.g.
> on Twitter via @GitHubStatus
>
> You might also consider BitBucket.org which now also supports
> git repositories (as well as mercurial/hg).
>
> One potential downside (to either of these hosts) is you will
> not get download counts or clone counts. If you use those
> figures at the moment as a proxy for your user base size
> this could be important.

You could use Sourceforge for some of this in collaboration with Github:

http://sourceforge.net/publish/?source=github

> Also make sure you are happy with the different GitHub
> support for downloads - you can't just upload a bunch
> of compiled packages like you can at SourceForge:
> https://github.com/blog/1302-goodbye-uploads
>
> I hope that is helpful,
>
> Regards,
>
> Peter

Again, for this see the above link for sourceforge.  I've a feeling they're starting to repurpose themselves as a publishing/download service.

chris


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Re: [Gmod-schema] Moving Chado svn repository to github

Peter Cock
In reply to this post by Scott Cain
On Mon, Aug 19, 2013 at 6:07 PM, Scott Cain <[hidden email]> wrote:
> Hi Peter,
>
> I wasn't aware of the downloads issues, but since out wiki already points at
> SourceForge for package downloads, I guess I can just keep using it for
> that.

Yes, you could - Chris suggested this too.

> While I will take a look at BitBucket, I'm leaning heavily towards GitHub
> since that is where the GBrowse, Bio::Graphics and JBrowse repositories are
> currently housed.

Good point, that's probably reason enough :)

Peter

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Re: [Gmod-schema] Moving Chado svn repository to github

Siddhartha Basu
In reply to this post by Scott Cain
Hi Scott,
Really appreciate making this move, however, would you be using the
issue tracker/pull request system to accept patches if needed. I am not
sure about how it is going to fit with the workflow at your end, just
throwing out an idea.
As far as package download is concern, i believe you will get a
downloadable tarball for each of your git tag. In addition, you could
also draft a tarball release through github's web UI.

thanks,
-siddhartha

On Mon, 19 Aug 2013, Scott Cain wrote:

>    Hi Peter,
>    I wasn't aware of the downloads issues, but since out wiki already points
>    at SourceForge for package downloads, I guess I can just keep using it for
>    that.  
>    While I will take a look at BitBucket, I'm leaning heavily towards GitHub
>    since that is where the GBrowse, Bio::Graphics and JBrowse repositories
>    are currently housed.
>    Scott
>
>    On Mon, Aug 19, 2013 at 1:01 PM, Peter Cock <[hidden email]>
>    wrote:
>
>      On Mon, Aug 19, 2013 at 5:54 PM, Scott Cain <[hidden email]> wrote:
>      > Hi all,
>      >
>      > I'm thinking about moving the Chado svn repository to Github; I had
>      some
>      > issues with the SourceForge repository over the last few weeks so I
>      think
>      > the time to move is on us.  I won't do the move until next week at the
>      > earliest, but I wanted to give everybody time to think it over and
>      make any
>      > commits that are sitting around.
>      >
>      > Please let me know if you'd rather I didn't do this, and if so,
>      preferably
>      > some well-thought out reason why not :-)
>      >
>      > Thanks,
>      > Scott
>
>      I've overall been very happy with GitHub.com, although from time
>      to time it has been unavailable - largely due to DDOS attacks -
>      the GitHub team are very good at providing status updates, e.g.
>      on Twitter via @GitHubStatus
>
>      You might also consider BitBucket.org which now also supports
>      git repositories (as well as mercurial/hg).
>
>      One potential downside (to either of these hosts) is you will
>      not get download counts or clone counts. If you use those
>      figures at the moment as a proxy for your user base size
>      this could be important.
>
>      Also make sure you are happy with the different GitHub
>      support for downloads - you can't just upload a bunch
>      of compiled packages like you can at SourceForge:
>      https://github.com/blog/1302-goodbye-uploads
>
>      I hope that is helpful,
>
>      Regards,
>
>      Peter
>
>    --
>    ------------------------------------------------------------------------
>    Scott Cain, Ph. D.                                   scott at scottcain
>    dot net
>    GMOD Coordinator (http://gmod.org/)                     216-392-3087
>    Ontario Institute for Cancer Research

> ------------------------------------------------------------------------------
> Introducing Performance Central, a new site from SourceForge and
> AppDynamics. Performance Central is your source for news, insights,
> analysis and resources for efficient Application Performance Management.
> Visit us today!
> http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk

> _______________________________________________
> Gmod-schema mailing list
> [hidden email]
> https://lists.sourceforge.net/lists/listinfo/gmod-schema


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Re: [Gmod-schema] Moving Chado svn repository to github

Lincoln Stein
True enough, I don't see a way to count downloads and clones! However, everything else about GitHub is generally superior than Sourceforge, so I support a migration.

Lincoln


On Wed, Aug 21, 2013 at 10:56 AM, Siddhartha Basu <[hidden email]> wrote:
Hi Scott,
Really appreciate making this move, however, would you be using the
issue tracker/pull request system to accept patches if needed. I am not
sure about how it is going to fit with the workflow at your end, just
throwing out an idea.
As far as package download is concern, i believe you will get a
downloadable tarball for each of your git tag. In addition, you could
also draft a tarball release through github's web UI.

thanks,
-siddhartha

On Mon, 19 Aug 2013, Scott Cain wrote:

>    Hi Peter,
>    I wasn't aware of the downloads issues, but since out wiki already points
>    at SourceForge for package downloads, I guess I can just keep using it for
>    that.
>    While I will take a look at BitBucket, I'm leaning heavily towards GitHub
>    since that is where the GBrowse, Bio::Graphics and JBrowse repositories
>    are currently housed.
>    Scott
>
>    On Mon, Aug 19, 2013 at 1:01 PM, Peter Cock <[hidden email]>
>    wrote:
>
>      On Mon, Aug 19, 2013 at 5:54 PM, Scott Cain <[hidden email]> wrote:
>      > Hi all,
>      >
>      > I'm thinking about moving the Chado svn repository to Github; I had
>      some
>      > issues with the SourceForge repository over the last few weeks so I
>      think
>      > the time to move is on us.  I won't do the move until next week at the
>      > earliest, but I wanted to give everybody time to think it over and
>      make any
>      > commits that are sitting around.
>      >
>      > Please let me know if you'd rather I didn't do this, and if so,
>      preferably
>      > some well-thought out reason why not :-)
>      >
>      > Thanks,
>      > Scott
>
>      I've overall been very happy with GitHub.com, although from time
>      to time it has been unavailable - largely due to DDOS attacks -
>      the GitHub team are very good at providing status updates, e.g.
>      on Twitter via @GitHubStatus
>
>      You might also consider BitBucket.org which now also supports
>      git repositories (as well as mercurial/hg).
>
>      One potential downside (to either of these hosts) is you will
>      not get download counts or clone counts. If you use those
>      figures at the moment as a proxy for your user base size
>      this could be important.
>
>      Also make sure you are happy with the different GitHub
>      support for downloads - you can't just upload a bunch
>      of compiled packages like you can at SourceForge:
>      https://github.com/blog/1302-goodbye-uploads
>
>      I hope that is helpful,
>
>      Regards,
>
>      Peter
>
>    --
>    ------------------------------------------------------------------------
>    Scott Cain, Ph. D.                                   scott at scottcain
>    dot net
>    GMOD Coordinator (http://gmod.org/)                     <a href="tel:216-392-3087" value="+12163923087">216-392-3087
>    Ontario Institute for Cancer Research

> ------------------------------------------------------------------------------
> Introducing Performance Central, a new site from SourceForge and
> AppDynamics. Performance Central is your source for news, insights,
> analysis and resources for efficient Application Performance Management.
> Visit us today!
> http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk

> _______________________________________________
> Gmod-schema mailing list
> [hidden email]
> https://lists.sourceforge.net/lists/listinfo/gmod-schema


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--
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <[hidden email]>

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Re: [Gmod-schema] Moving Chado svn repository to github

Lincoln Stein
It does look as though you can count downloads on a repository via the REST API: http://developer.github.com/v3/activity/events/types/#downloadevent

Lincoln


On Thu, Aug 29, 2013 at 3:47 PM, Lincoln Stein <[hidden email]> wrote:
True enough, I don't see a way to count downloads and clones! However, everything else about GitHub is generally superior than Sourceforge, so I support a migration.

Lincoln


On Wed, Aug 21, 2013 at 10:56 AM, Siddhartha Basu <[hidden email]> wrote:
Hi Scott,
Really appreciate making this move, however, would you be using the
issue tracker/pull request system to accept patches if needed. I am not
sure about how it is going to fit with the workflow at your end, just
throwing out an idea.
As far as package download is concern, i believe you will get a
downloadable tarball for each of your git tag. In addition, you could
also draft a tarball release through github's web UI.

thanks,
-siddhartha

On Mon, 19 Aug 2013, Scott Cain wrote:

>    Hi Peter,
>    I wasn't aware of the downloads issues, but since out wiki already points
>    at SourceForge for package downloads, I guess I can just keep using it for
>    that.
>    While I will take a look at BitBucket, I'm leaning heavily towards GitHub
>    since that is where the GBrowse, Bio::Graphics and JBrowse repositories
>    are currently housed.
>    Scott
>
>    On Mon, Aug 19, 2013 at 1:01 PM, Peter Cock <[hidden email]>
>    wrote:
>
>      On Mon, Aug 19, 2013 at 5:54 PM, Scott Cain <[hidden email]> wrote:
>      > Hi all,
>      >
>      > I'm thinking about moving the Chado svn repository to Github; I had
>      some
>      > issues with the SourceForge repository over the last few weeks so I
>      think
>      > the time to move is on us.  I won't do the move until next week at the
>      > earliest, but I wanted to give everybody time to think it over and
>      make any
>      > commits that are sitting around.
>      >
>      > Please let me know if you'd rather I didn't do this, and if so,
>      preferably
>      > some well-thought out reason why not :-)
>      >
>      > Thanks,
>      > Scott
>
>      I've overall been very happy with GitHub.com, although from time
>      to time it has been unavailable - largely due to DDOS attacks -
>      the GitHub team are very good at providing status updates, e.g.
>      on Twitter via @GitHubStatus
>
>      You might also consider BitBucket.org which now also supports
>      git repositories (as well as mercurial/hg).
>
>      One potential downside (to either of these hosts) is you will
>      not get download counts or clone counts. If you use those
>      figures at the moment as a proxy for your user base size
>      this could be important.
>
>      Also make sure you are happy with the different GitHub
>      support for downloads - you can't just upload a bunch
>      of compiled packages like you can at SourceForge:
>      https://github.com/blog/1302-goodbye-uploads
>
>      I hope that is helpful,
>
>      Regards,
>
>      Peter
>
>    --
>    ------------------------------------------------------------------------
>    Scott Cain, Ph. D.                                   scott at scottcain
>    dot net
>    GMOD Coordinator (http://gmod.org/)                     <a href="tel:216-392-3087" value="+12163923087" target="_blank">216-392-3087
>    Ontario Institute for Cancer Research

> ------------------------------------------------------------------------------
> Introducing Performance Central, a new site from SourceForge and
> AppDynamics. Performance Central is your source for news, insights,
> analysis and resources for efficient Application Performance Management.
> Visit us today!
> http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk

> _______________________________________________
> Gmod-schema mailing list
> [hidden email]
> https://lists.sourceforge.net/lists/listinfo/gmod-schema


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analysis and resources for efficient Application Performance Management.
Visit us today!
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--
Lincoln D. Stein
Director, Informatics and Biocomputing Platform

Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
<a href="tel:416%20673-8514" value="+14166738514" target="_blank">416 673-8514
Assistant: Renata Musa <[hidden email]>



--
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <[hidden email]>

------------------------------------------------------------------------------
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Re: [Gmod-schema] Moving Chado svn repository to github

Siddhartha Basu
I have also found something like this,
https://github.com/libgit2/libgit2/downloads. However, it might not be
possible for recent repos, because they have discontinued their upload
process which used to keep track of the downloads.
https://github.com/blog/1302-goodbye-uploads

thanks,
-siddhartha

On Thu, 29 Aug 2013, Lincoln Stein wrote:

>    It does look as though you can count downloads on a repository via the
>    REST
>    API: http://developer.github.com/v3/activity/events/types/#downloadevent
>    Lincoln
>
>    On Thu, Aug 29, 2013 at 3:47 PM, Lincoln Stein <[hidden email]>
>    wrote:
>
>      True enough, I don't see a way to count downloads and clones! However,
>      everything else about GitHub is generally superior than Sourceforge, so
>      I support a migration.
>      Lincoln
>
>      On Wed, Aug 21, 2013 at 10:56 AM, Siddhartha Basu <[hidden email]>
>      wrote:
>
>        Hi Scott,
>        Really appreciate making this move, however, would you be using the
>        issue tracker/pull request system to accept patches if needed. I am
>        not
>        sure about how it is going to fit with the workflow at your end, just
>        throwing out an idea.
>        As far as package download is concern, i believe you will get a
>        downloadable tarball for each of your git tag. In addition, you could
>        also draft a tarball release through github's web UI.
>
>        thanks,
>        -siddhartha
>        On Mon, 19 Aug 2013, Scott Cain wrote:
>
>        >    Hi Peter,
>        >    I wasn't aware of the downloads issues, but since out wiki
>        already points
>        >    at SourceForge for package downloads, I guess I can just keep
>        using it for
>        >    that.
>        >    While I will take a look at BitBucket, I'm leaning heavily
>        towards GitHub
>        >    since that is where the GBrowse, Bio::Graphics and JBrowse
>        repositories
>        >    are currently housed.
>        >    Scott
>        >
>        >    On Mon, Aug 19, 2013 at 1:01 PM, Peter Cock
>        <[hidden email]>
>        >    wrote:
>        >
>        >      On Mon, Aug 19, 2013 at 5:54 PM, Scott Cain
>        <[hidden email]> wrote:
>        >      > Hi all,
>        >      >
>        >      > I'm thinking about moving the Chado svn repository to Github;
>        I had
>        >      some
>        >      > issues with the SourceForge repository over the last few
>        weeks so I
>        >      think
>        >      > the time to move is on us.  I won't do the move until next
>        week at the
>        >      > earliest, but I wanted to give everybody time to think it
>        over and
>        >      make any
>        >      > commits that are sitting around.
>        >      >
>        >      > Please let me know if you'd rather I didn't do this, and if
>        so,
>        >      preferably
>        >      > some well-thought out reason why not :-)
>        >      >
>        >      > Thanks,
>        >      > Scott
>        >
>        >      I've overall been very happy with GitHub.com, although from
>        time
>        >      to time it has been unavailable - largely due to DDOS attacks -
>        >      the GitHub team are very good at providing status updates, e.g.
>        >      on Twitter via @GitHubStatus
>        >
>        >      You might also consider BitBucket.org which now also supports
>        >      git repositories (as well as mercurial/hg).
>        >
>        >      One potential downside (to either of these hosts) is you will
>        >      not get download counts or clone counts. If you use those
>        >      figures at the moment as a proxy for your user base size
>        >      this could be important.
>        >
>        >      Also make sure you are happy with the different GitHub
>        >      support for downloads - you can't just upload a bunch
>        >      of compiled packages like you can at SourceForge:
>        >      https://github.com/blog/1302-goodbye-uploads
>        >
>        >      I hope that is helpful,
>        >
>        >      Regards,
>        >
>        >      Peter
>        >
>        >    --
>        >  
>         ------------------------------------------------------------------------
>        >    Scott Cain, Ph. D.                                   scott at
>        scottcain
>        >    dot net
>        >    GMOD Coordinator (http://gmod.org/)                    
>        216-392-3087
>        >    Ontario Institute for Cancer Research
>
>        >
>        ------------------------------------------------------------------------------
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>
>      --
>      Lincoln D. Stein
>      Director, Informatics and Biocomputing Platform
>      Ontario Institute for Cancer Research
>      101 College St., Suite 800
>      Toronto, ON, Canada M5G0A3
>      416 673-8514
>      Assistant: Renata Musa <[hidden email]>
>
>    --
>    Lincoln D. Stein
>    Director, Informatics and Biocomputing Platform
>    Ontario Institute for Cancer Research
>    101 College St., Suite 800
>    Toronto, ON, Canada M5G0A3
>    416 673-8514
>    Assistant: Renata Musa <[hidden email]>

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