Multiple UTR ?

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Multiple UTR ?

Patrick Tran Van-2

Hi Carson,


I have seen something strange in my annotation: multiple UTR. How can we explain this ?  Thanks!


Scaffold maker mRNA 12117462 12128433 . - . ID=GENE_02395-RA;Parent=GENE_02395;Name=GENE_02395-RA;Alias=maker-Scaffold-augustus-gene-40.12-mRNA-3;_AED=0.02;_QI=5383|1|1|1|0.88|0.9|10|247|238;_eAED=0.02;Note=Protein of unknown function;
Scaffold maker exon 12128112 12128433 . - . ID=GENE_02395-RA:exon:571;Parent=GENE_02395-RA;
Scaffold maker exon 12117462 12118046 . - . ID=GENE_02395-RB:exon:569;Parent=GENE_02395-RB,GENE_02395-RC,GENE_02395-RA;
Scaffold maker exon 12118141 12118301 . - . ID=GENE_02395-RB:exon:568;Parent=GENE_02395-RB,GENE_02395-RC,GENE_02395-RA;
Scaffold maker exon 12118386 12118539 . - . ID=GENE_02395-RB:exon:567;Parent=GENE_02395-RB,GENE_02395-RA;
Scaffold maker exon 12118818 12122493 . - . ID=GENE_02395-RB:exon:566;Parent=GENE_02395-RB,GENE_02395-RA;
Scaffold maker exon 12123591 12123893 . - . ID=GENE_02395-RB:exon:565;Parent=GENE_02395-RB,GENE_02395-RC,GENE_02395-RA;
Scaffold maker exon 12123995 12124303 . - . ID=GENE_02395-RB:exon:564;Parent=GENE_02395-RB,GENE_02395-RC,GENE_02395-RA;
Scaffold maker exon 12125119 12125418 . - . ID=GENE_02395-RB:exon:563;Parent=GENE_02395-RB,GENE_02395-RC,GENE_02395-RA;
Scaffold maker exon 12126005 12126313 . - . ID=GENE_02395-RB:exon:562;Parent=GENE_02395-RB,GENE_02395-RC,GENE_02395-RA;
Scaffold maker exon 12127460 12127687 . - . ID=GENE_02395-RB:exon:561;Parent=GENE_02395-RB,GENE_02395-RC,GENE_02395-RA;
Scaffold maker five_prime_UTR 12128112 12128433 . - . ID=GENE_02395-RA:five_prime_utr;Parent=GENE_02395-RA;
Scaffold maker five_prime_UTR 12127460 12127687 . - . ID=GENE_02395-RA:five_prime_utr;Parent=GENE_02395-RA;
Scaffold maker five_prime_UTR 12126005 12126313 . - . ID=GENE_02395-RA:five_prime_utr;Parent=GENE_02395-RA;
Scaffold maker five_prime_UTR 12125119 12125418 . - . ID=GENE_02395-RA:five_prime_utr;Parent=GENE_02395-RA;
Scaffold maker five_prime_UTR 12123995 12124303 . - . ID=GENE_02395-RA:five_prime_utr;Parent=GENE_02395-RA;
Scaffold maker five_prime_UTR 12123591 12123893 . - . ID=GENE_02395-RA:five_prime_utr;Parent=GENE_02395-RA;
Scaffold maker five_prime_UTR 12118882 12122493 . - . ID=GENE_02395-RA:five_prime_utr;Parent=GENE_02395-RA;
Scaffold maker CDS 12118818 12118881 . - 0 ID=GENE_02395-RA:cds;Parent=GENE_02395-RA;
Scaffold maker CDS 12118386 12118539 . - 2 ID=GENE_02395-RA:cds;Parent=GENE_02395-RA;
Scaffold maker CDS 12118141 12118301 . - 1 ID=GENE_02395-RA:cds;Parent=GENE_02395-RA;
Scaffold maker CDS 12117709 12118046 . - 2 ID=GENE_02395-RA:cds;Parent=GENE_02395-RA;
Scaffold maker three_prime_UTR 12117462 12117708 . - . ID=GENE_02395-RA:three_prime_utr;Parent=GENE_02395-RA;



Patrick Tran Van

Bioinformatician: Lab Chapuisat & Schwander
Department of Ecology and Evolution
University of Lausanne
Lausanne - Switzerland
Office 3206

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