Mysterious Error

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Mysterious Error

Vallejos, Andrew

Here is my error… I have checked the source XML file… even ran it with a very simple test data set.  I have checked the additions.xml and project.xml files as well.  I cannot find any errors and I really don’t even know if I am looking at the correct files.

 

Thanks,

 

Andrew

 

[integrate] Performing integration action "retrieve" for source "rat-affy-probes" (rat-affy-probes) in: /usr/local/intermine/bio/ratmine_bio_sources/rat-affy-probes

 [property] Override ignored for no.dep

 [property] Override ignored for source.location

 

BUILD FAILED

/usr/local/intermine/imbuild/integrate.xml:54: You must specify value, location or refid with the name attribute

            at org.apache.tools.ant.taskdefs.Property.execute(Property.java:442)

            at org.intermine.task.Integrate.performAction(Integrate.java:198)

            at org.intermine.task.Integrate.performAction(Integrate.java:135)

            at org.intermine.task.Integrate.execute(Integrate.java:127)

            at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)

            at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)

            at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)

            at java.lang.reflect.Method.invoke(Method.java:597)

            at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)

            at org.apache.tools.ant.Task.perform(Task.java:348)

            at org.apache.tools.ant.Target.execute(Target.java:390)

            at org.apache.tools.ant.Target.performTasks(Target.java:411)

            at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1360)

            at org.apache.tools.ant.Project.executeTarget(Project.java:1329)

            at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)

            at org.apache.tools.ant.Project.executeTargets(Project.java:1212)

            at org.apache.tools.ant.Main.runBuild(Main.java:801)

            at org.apache.tools.ant.Main.startAnt(Main.java:218)

            at org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)

            at org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)

 

Total time: 18 seconds

 

======================

Andrew Vallejos

Web Developer II

Biotechnology and Bioengineering Center

Medical College of Wisconsin

414-955-4104

[hidden email]

 


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Re: Mysterious Error

Vallejos, Andrew

I found the error.

 

I have typed ‘locatoin’ instead of ‘location’ in my project.xml file.

 

-Andrew

 


From: [hidden email] [mailto:[hidden email]] On Behalf Of Vallejos, Andrew
Sent: Friday, July 02, 2010 9:56 AM
To: [hidden email]
Subject: [InterMine Dev] Mysterious Error

 

Here is my error… I have checked the source XML file… even ran it with a very simple test data set.  I have checked the additions.xml and project.xml files as well.  I cannot find any errors and I really don’t even know if I am looking at the correct files.

 

Thanks,

 

Andrew

 

[integrate] Performing integration action "retrieve" for source "rat-affy-probes" (rat-affy-probes) in: /usr/local/intermine/bio/ratmine_bio_sources/rat-affy-probes

 [property] Override ignored for no.dep

 [property] Override ignored for source.location

 

BUILD FAILED

/usr/local/intermine/imbuild/integrate.xml:54: You must specify value, location or refid with the name attribute

            at org.apache.tools.ant.taskdefs.Property.execute(Property.java:442)

            at org.intermine.task.Integrate.performAction(Integrate.java:198)

            at org.intermine.task.Integrate.performAction(Integrate.java:135)

            at org.intermine.task.Integrate.execute(Integrate.java:127)

            at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)

            at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)

            at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)

            at java.lang.reflect.Method.invoke(Method.java:597)

            at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)

            at org.apache.tools.ant.Task.perform(Task.java:348)

            at org.apache.tools.ant.Target.execute(Target.java:390)

            at org.apache.tools.ant.Target.performTasks(Target.java:411)

            at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1360)

            at org.apache.tools.ant.Project.executeTarget(Project.java:1329)

            at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)

            at org.apache.tools.ant.Project.executeTargets(Project.java:1212)

            at org.apache.tools.ant.Main.runBuild(Main.java:801)

            at org.apache.tools.ant.Main.startAnt(Main.java:218)

            at org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)

            at org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)

 

Total time: 18 seconds

 

======================

Andrew Vallejos

Web Developer II

Biotechnology and Bioengineering Center

Medical College of Wisconsin

414-955-4104

[hidden email]

 


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Re: Mysterious Error

Richard Smith
Great.  We'll update so it tells you that the problem is with the
project.xml file.

Cheers,
Richard.



Vallejos, Andrew wrote:

> I found the error.
>
>  
>
> I have typed 'locatoin' instead of 'location' in my project.xml file.
>
>  
>
> -Andrew
>
>  
>
> ________________________________
>
> From: [hidden email] [mailto:[hidden email]] On
> Behalf Of Vallejos, Andrew
> Sent: Friday, July 02, 2010 9:56 AM
> To: [hidden email]
> Subject: [InterMine Dev] Mysterious Error
>
>  
>
> Here is my error... I have checked the source XML file... even ran it
> with a very simple test data set.  I have checked the additions.xml and
> project.xml files as well.  I cannot find any errors and I really don't
> even know if I am looking at the correct files.
>
>  
>
> Thanks,
>
>  
>
> Andrew
>
>  
>
> [integrate] Performing integration action "retrieve" for source
> "rat-affy-probes" (rat-affy-probes) in:
> /usr/local/intermine/bio/ratmine_bio_sources/rat-affy-probes
>
>  [property] Override ignored for no.dep
>
>  [property] Override ignored for source.location
>
>  
>
> BUILD FAILED
>
> /usr/local/intermine/imbuild/integrate.xml:54: You must specify value,
> location or refid with the name attribute
>
>             at
> org.apache.tools.ant.taskdefs.Property.execute(Property.java:442)
>
>             at
> org.intermine.task.Integrate.performAction(Integrate.java:198)
>
>             at
> org.intermine.task.Integrate.performAction(Integrate.java:135)
>
>             at org.intermine.task.Integrate.execute(Integrate.java:127)
>
>             at
> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
>
>             at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown
> Source)
>
>             at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessor
> Impl.java:25)
>
>             at java.lang.reflect.Method.invoke(Method.java:597)
>
>             at
> org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:1
> 06)
>
>             at org.apache.tools.ant.Task.perform(Task.java:348)
>
>             at org.apache.tools.ant.Target.execute(Target.java:390)
>
>             at org.apache.tools.ant.Target.performTasks(Target.java:411)
>
>             at
> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1360)
>
>             at
> org.apache.tools.ant.Project.executeTarget(Project.java:1329)
>
>             at
> org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecut
> or.java:41)
>
>             at
> org.apache.tools.ant.Project.executeTargets(Project.java:1212)
>
>             at org.apache.tools.ant.Main.runBuild(Main.java:801)
>
>             at org.apache.tools.ant.Main.startAnt(Main.java:218)
>
>             at
> org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
>
>             at
> org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)
>
>  
>
> Total time: 18 seconds
>
>  
>
> ======================
>
> Andrew Vallejos
>
> Web Developer II
>
> Biotechnology and Bioengineering Center
>
> Medical College of Wisconsin
>
> 414-955-4104
>
> [hidden email]
>
>  
>
>
>
>
> ------------------------------------------------------------------------
>
> _______________________________________________
> dev mailing list
> [hidden email]
> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev


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