New Apollo Release 2.0.4 (JB1.12.2-apollo)

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New Apollo Release 2.0.4 (JB1.12.2-apollo)

Monica Munoz-Torres
We are pleased to announce the latest Apollo release
Apollo 2.0.4

Some of the new features include: 
  • Users may download genomic sequences from highlighted regions. 
  • Information from parent features can be retained when loading transcripts onto the 'User-created Annotations' area using the command line. 
  • REMOTE_USER authentication and user authentication modules are now available.
  • Ability to enter pre-specified (canned) values for Attributes in the 'Information Editor', similar to canned Comments.
  • Added documentation for using Apollo with Docker
Some important fixes include: 

* The latest release can be downloaded from GitHub at:

* Detailed, searchable documentation on pre-requisites, configuration, and installation guides found at:

* A more detailed account of all changes is available in the Apollo ChangeLog:

* Quick-Start Guide for Apollo 2.0.x: If you already have Apollo instances running, you can use your current JBrowse data directories. The quick-start guide is available at:

* Migrating existing annotations: You will need to migrate existing annotations from Web Apollo 1.0.x. Please find detailed information about migrating annotations at

* Troubleshooting, GitHub tracker, Mailing List: 

* The Apollo User Guide is available at

* Public Demo: If you are new to Apollo we encourage you to learn more about our software and its functionality by taking a tour of our Apollo Demo at

These and more details are available at the Apollo Website and Apollo repository.

We look forward to your questions and suggestions. 


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Mentorship Matters!
Monica Munoz-Torres, PhD.
Berkeley Bioinformatics Open-source Projects (BBOP)
Environmental Genomics and Systems Biology Division
Lawrence Berkeley National Laboratory

Mailing Address:
Lawrence Berkeley National Laboratory
1 Cyclotron Road Mailstop 977
Berkeley, CA 94720

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