OSX Yosemite install, tests fail

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OSX Yosemite install, tests fail

v singh
Hi,

I have been trying to (unsuccessfully) install GBrowse on MacOSX Yosemite. I have managed to reduce the number of failing tests from 7/10 to 3/10 now. I installed GBrowse anyways despite the failing tests, so now the index page and tutorials load but the 'yeast' example etc. do not load (Not found on server). 

Below is given the output of Build tests, I have seen another thread about CGI warnings but the errors in mine are different. I will be grateful for any pointers on how to fix these errors and get my GBrowse up and running.

Also, when I tried to build the demo, I got the following error --

-------------------
$ ./Build demo
NOTE: Run ./Build reconfig to change existing configuration.
Building GBrowse
Creating include file for Apache config: blib/etc/apache2/other/gbrowse2.conf
httpd: Syntax error on line 22 of /var/folders/3x/9zfph_ls2m5g22jz14vjzsrwgn7xtt/T/GBrowse_demo_PNlL/conf/httpd.conf: Cannot load /opt/local/apache2/modules/mod_log_config.so into server: dlopen(/opt/local/apache2/modules/mod_log_config.so, 10): image not found
Apache failed to start. Perhaps the demo is already running?
--------------------------

The error here (in demo) is that '/opt/local/apache2/modules/mod_log_config.so' is not found, but in OSX10.10 Yosemite .. the modules for apache are stored in /usr/libexec/apache2/ instead. How can I fix this problem?

Thanks!

----------------------------------------------------
$ ./Build test

NOTE: Run ./Build reconfig to change existing configuration.
/etc/apache2/other/gbrowse2.conf is already installed. Please run ./Build apache_conf to see this file's recommended contents.
t/00.compile.t ............ ok     
t/01.yeast.t .............. ok   
t/02.rearchitecture.t ..... ok     
t/03.render.t ............. 1/150 CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2359, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2368, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2378, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Action.pm line 285, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Action.pm line 306, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Action.pm line 285, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Action.pm line 177, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Action.pm line 177, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Action.pm line 177, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Action.pm line 177, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
t/03.render.t ............. 104/150 http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2359, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2368, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2378, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2395, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2403, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2403, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2442, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2446, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2359, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2368, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2378, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2395, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2403, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2403, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2442, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2446, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2359, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2368, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2378, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2395, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2403, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2403, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2442, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2446, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2359, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2368, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2378, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2395, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2403, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2442, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2446, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2359, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2368, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2378, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2395, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2403, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2403, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2442, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2446, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
http://localhost:57078; search failed: 500 Can't connect to localhost:57078 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57077; search failed: 500 Can't connect to localhost:57077 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
t/03.render.t ............. ok       
t/04.remoteserver.t ....... Sometimes this test gets 'stuck'. If this happens, kill the test and Build test again.
t/04.remoteserver.t ....... 1/43 CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2359, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2368, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2378, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2395, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2403, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2403, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2442, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2446, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
http://localhost:57130; search failed: 500 Can't connect to localhost:57130 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57129; search failed: 500 Can't connect to localhost:57129 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
t/04.remoteserver.t ....... 3/43 Storable binary image v33.97 more recent than I am (v2.9) at /System/Library/Perl/5.18/darwin-thread-multi-2level/Storable.pm line 417, at t/04.remoteserver.t line 131.
t/04.remoteserver.t ....... Dubious, test returned 61 (wstat 15616, 0x3d00)
Failed 40/43 subtests 
(less 1 skipped subtest: 2 okay)
t/05.deferredrendering.t .. 1/19 CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2359, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2368, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2378, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2395, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2403, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2403, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2442, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
CGI::param called in list context from /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 2446, this can lead to vulnerabilities. See the warning in "Fetching the value or values of a single named parameter" at /Library/Perl/5.18/CGI.pm line 404.
http://localhost:57139; search failed: 500 Can't connect to localhost:57139 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
http://localhost:57140; search failed: 500 Can't connect to localhost:57140 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564.
t/05.deferredrendering.t .. 4/19 [1682] rendering error track:  Can't connect to localhost:57140 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 3695.
[1682] rendering error track:  Can't connect to localhost:57140 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/Render.pm line 3695.
t/05.deferredrendering.t .. Failed 5/19 subtests 
t/06.featuresearch.t ...... 1/26 http://localhost:57157; search failed: 500 Can't connect to localhost:57157 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564, <> line 45.
http://localhost:57156; search failed: 500 Can't connect to localhost:57156 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564, <> line 45.
http://localhost:57157; search failed: 500 Can't connect to localhost:57157 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564, <> line 45.
http://localhost:57156; search failed: 500 Can't connect to localhost:57156 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564, <> line 45.
http://localhost:57157; search failed: 500 Can't connect to localhost:57157 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564, <> line 45.
http://localhost:57156; search failed: 500 Can't connect to localhost:57156 (Connection refused) at /Users/vasantis/Software/GBrowse/t/../lib/Bio/Graphics/Browser2/RegionSearch.pm line 564, <> line 45.
t/06.featuresearch.t ...... Failed 3/26 subtests 
t/07.balancer.t ........... ok     
t/07.karyotype.t .......... ok   
t/08.calign.t ............. ok   

Test Summary Report
-------------------
t/04.remoteserver.t     (Wstat: 15616 Tests: 4 Failed: 1)
  Failed test:  3
  Non-zero exit status: 61
  Parse errors: Bad plan.  You planned 43 tests but ran 4.
t/05.deferredrendering.t (Wstat: 0 Tests: 19 Failed: 5)
  Failed tests:  7, 11, 14, 18-19
t/06.featuresearch.t    (Wstat: 0 Tests: 26 Failed: 3)
  Failed tests:  24-26
Files=10, Tests=424, 24 wallclock secs ( 0.07 usr  0.03 sys +  9.78 cusr  3.01 csys = 12.89 CPU)
Result: FAIL
Failed 3/10 test programs. 9/424 subtests failed.


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