Problems with ipr_update_gff

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Problems with ipr_update_gff

Eduardo Conrado Souza Queiroz Nascimento
Hi, I'm a graduate student at the Federal University of Rio de Janeiro in Brazil, I've been running into problems while trying to run the "ipr_update_gff" script. This message keeps showing and I haven't found a way to solve it.


Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178309.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178310.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178310.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178311.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178311.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178311.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178311.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178311.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178312.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178312.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178313.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178313.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178314.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178314.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178315.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178315.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178316.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178316.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178317.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178317.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178318.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178318.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178319.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178319.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178320.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178320.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178320.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178321.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178321.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178321.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178322.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178322.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178323.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178323.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178323.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178323.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178323.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178324.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178324.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178325.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178325.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178326.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178326.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178327.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178327.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178328.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178328.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178329.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178329.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178330.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178330.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178331.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178331.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178331.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178332.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178332.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178333.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178333.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178334.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178334.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178334.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178334.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178334.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178335.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178335.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178336.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178336.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178337.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178337.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178338.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178338.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178339.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178339.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178340.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178340.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178341.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178341.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178342.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178342.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178343.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178343.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178344.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178344.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178345.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178345.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178345.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178346.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178346.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178346.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178347.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178347.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178348.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178348.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178348.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178348.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178348.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178349.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178349.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178350.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178350.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178351.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178351.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178351.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178352.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178352.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178353.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178353.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178353.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178353.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178354.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178354.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178355.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178355.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178356.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178356.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178357.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178357.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178358.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178358.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178359.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178359.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178360.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178360.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178361.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178361.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178362.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178362.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178363.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178363.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178364.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178364.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178365.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178365.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178366.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178366.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178366.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178366.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178366.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178366.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178367.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178367.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178368.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178368.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178369.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178369.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178369.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178370.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178370.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178371.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178371.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178371.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178372.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178372.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178372.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178373.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178373.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178374.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178374.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178375.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178375.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178376.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178376.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178377.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178377.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178378.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178378.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178378.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178378.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178378.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178379.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178379.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178380.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178380.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178381.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178381.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178382.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178382.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178383.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178383.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178383.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178384.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178384.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178385.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178385.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178386.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178386.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178387.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178387.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178388.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178388.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178389.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178389.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178389.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178389.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178390.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178390.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178390.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178391.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178391.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178392.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178392.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178393.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178393.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178393.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178393.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178394.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178394.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178395.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178395.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178395.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178395.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178396.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178396.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178397.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178397.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178398.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178398.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178399.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178399.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178400.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178400.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178401.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178401.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178402.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178402.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178402.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178402.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178403.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178403.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178404.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178404.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178405.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178405.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178406.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178406.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178407.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178407.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178408.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178408.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178409.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178409.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178410.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178410.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178411.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178411.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178412.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178412.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178413.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178413.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178414.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178414.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178415.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178415.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178416.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178416.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178417.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178417.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178418.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178418.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178419.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178419.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178420.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178420.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178420.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178420.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178421.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178421.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178422.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178422.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178422.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178422.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178423.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178423.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178424.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178424.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178425.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178425.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178426.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178426.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178427.
Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178427.

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Re: Problems with ipr_update_gff

Carson Holt-2
It means the ID in the interproscan report and the GFF3 file are different

This means either you have altered the names at some point so one does not match the other, or you ran interproscan on entries that are not gene models in the GFF3. For example you ran on the Snap or Augustus fast file rather than the maker proteins file. Since not all Snap/Augustus models are genes (it’s a raw report that includes rejected models) you have no corresponding gene/mRNA/exon/CDS feature in the GFF3 file to match with.

—Carson



> On May 31, 2019, at 1:26 PM, Eduardo Conrado Souza Queiroz Nascimento <[hidden email]> wrote:
>
> Hi, I'm a graduate student at the Federal University of Rio de Janeiro in Brazil, I've been running into problems while trying to run the "ipr_update_gff" script. This message keeps showing and I haven't found a way to solve it.
>
>
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178309.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178310.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178310.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178311.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178311.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178311.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178311.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178311.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178312.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178312.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178313.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178313.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178314.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178314.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178315.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178315.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178316.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178316.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178317.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178317.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178318.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178318.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178319.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178319.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178320.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178320.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178320.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178321.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178321.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178321.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178322.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178322.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178323.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178323.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178323.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178323.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178323.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178324.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178324.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178325.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178325.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178326.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178326.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178327.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178327.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178328.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178328.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178329.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178329.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178330.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178330.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178331.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178331.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178331.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178332.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178332.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178333.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178333.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178334.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178334.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178334.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178334.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178334.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178335.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178335.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178336.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178336.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178337.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178337.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178338.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178338.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178339.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178339.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178340.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178340.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178341.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178341.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178342.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178342.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178343.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178343.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178344.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178344.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178345.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178345.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178345.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178346.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178346.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178346.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178347.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178347.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178348.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178348.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178348.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178348.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178348.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178349.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178349.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178350.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178350.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178351.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178351.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178351.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178352.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178352.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178353.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178353.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178353.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178353.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178354.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178354.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178355.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178355.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178356.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178356.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178357.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178357.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178358.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178358.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178359.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178359.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178360.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178360.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178361.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178361.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178362.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178362.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178363.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178363.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178364.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178364.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178365.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178365.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178366.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178366.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178366.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178366.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178366.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178366.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178367.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178367.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178368.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178368.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178369.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178369.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178369.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178370.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178370.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178371.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178371.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178371.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178372.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178372.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178372.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178373.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178373.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178374.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178374.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178375.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178375.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178376.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178376.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178377.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178377.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178378.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178378.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178378.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178378.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178378.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178379.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178379.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178380.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178380.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178381.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178381.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178382.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178382.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178383.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178383.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178383.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178384.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178384.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178385.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178385.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178386.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178386.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178387.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178387.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178388.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178388.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178389.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178389.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178389.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178389.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178390.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178390.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178390.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178391.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178391.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178392.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178392.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178393.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178393.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178393.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178393.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178394.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178394.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178395.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178395.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178395.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178395.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178396.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178396.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178397.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178397.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178398.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178398.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178399.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178399.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178400.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178400.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178401.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178401.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178402.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178402.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178402.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178402.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178403.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178403.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178404.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178404.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178405.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178405.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178406.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178406.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178407.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178407.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178408.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178408.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178409.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178409.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178410.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178410.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178411.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178411.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178412.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178412.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178413.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178413.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178414.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178414.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178415.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178415.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178416.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178416.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178417.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178417.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178418.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178418.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178419.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178419.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178420.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178420.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178420.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178420.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178421.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178421.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178422.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178422.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178422.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 204, <$IN> line 178422.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178423.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178423.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178424.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178424.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178425.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178425.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178426.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178426.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 200, <$IN> line 178427.
> Use of uninitialized value $gene_id in hash element at /usr/bin/maker/bin/ipr_update_gff line 202, <$IN> line 178427.
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