Re: BLAST plugin

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Re: BLAST plugin

Scott Cain
Forwarding to the full jbrowse mailing list...

On Wed, May 31, 2017 at 3:03 PM, Vaneet Lotay <[hidden email]> wrote:

Hi All,

 

Is there a way to BLAST an input sequence against the visible sequences/models displayed in JBrowse within the browser page?  In GBrowse there was a plugin that did this using the AlignTwoSequnces.pm module.  I’m just wondering if anyone has figured out how to port this plugin to JBrowse or if there exists a way within JBrowse to setup this type of feature?

 

Thanks,

 

Vaneet

 

Vaneet Lotay

Xenbase Bioinformatician

716 ICT Building - University of Calgary

2500 University Drive NW

Calgary AB T2N 1N4

CANADA

 




--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

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