Re: Gmod-gbrowse Digest, Vol 49, Issue 17

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Re: Gmod-gbrowse Digest, Vol 49, Issue 17

Leonor Palmeira
Hi Dino,

it looks like a badly installed Perl Module (which contains your .pm
file). Try to manually install Module::Build from the cpan website.
It should fix your problem.

Best,
Leonor.

[hidden email] a écrit :

>
> I check better, and I verify that the file exists but the file is empty
>
> How can I deal with this problem?
>
> Where could I find the .pm file?
>
> All the best
> Dino
>
>
> On Jun 7, 2010, at 5:25 PM, Jayaraman, Pushkala wrote:
>
>> Hello Dino,
>> Favicon.ico error is not a problem..
>> Try going to the ConfigData.pm. There has to be a line that lets you activate debugging.
>> Something like CONSTANT DEBUG => 0
>> Make it CONSTANT_DEBUG =>1
>> See what debug statements it gives..
>>  
>> Pushkala Jayaraman
>> Programmer/Analyst
>> Rat Genome Database
>> Human and Molecular Genetics Center
>> Medical College of Wisconsin
>> Email: [hidden email]
>> Work: 414-955-2229
>> www.rgd.mcw.edu
>>  
>> From: Dino Ienco [mailto:[hidden email]]
>> Sent: Monday, June 07, 2010 4:46 AM
>> To: Dave Clements, GMOD Help Desk
>> Cc: [hidden email]
>> Subject: Re: [Gmod-gbrowse] information about GBROWSE installation
>>  
>> Dear Dave,
>>             I check the problem and the file is in the correct folder. (The one that you suggest me).
>> What should I try to solve this problem?
>>  
>> All the best
>>  
>> Dino
>>  
>>  
>> On Jun 2, 2010, at 12:38 AM, Dave Clements, GMOD Help Desk wrote:
>>
>>
>> Hi dino,
>>  
>> On my Ubuntu the complaining file is at:
>>   /usr/local/lib/perl/5.10.0/GBrowse/ConfigData.pm
>>  
>> Does that file exist, and is it world readable, on your system?
>>  
>> Dave C.
>>  
>> On Mon, May 31, 2010 at 7:36 AM, Dino Ienco <[hidden email]> wrote:
>> Dear Mailing List,
>>             I'm a beginner with GBROWSE.
>> I download gbrowse and I installed it on my ubuntu.
>> Now I start the demo application, but when I click on the example link (for instance the first example on yeast)
>> I obtain the following message
>>             500 Internal Server Error.
>>  
>>  
>> I look at the log of apache2 and I see this error message:
>>  
>> [Mon May 31 16:29:17 2010] [error] [client ::1] File does not exist: /var/www/favicon.ico
>> GBrowse/ConfigData.pm did not return a true value at /usr/local/lib/perl/5.10.0/Bio/Graphics/Browser2.pm line 18.
>> BEGIN failed--compilation aborted at /usr/local/lib/perl/5.10.0/Bio/Graphics/Browser2.pm line 18.
>> Compilation failed in require at /usr/lib/cgi-bin/gb2/gbrowse line 8.
>> BEGIN failed--compilation aborted at /usr/lib/cgi-bin/gb2/gbrowse line 8.
>>  
>>  
>> Anybody can help/explain me about this error and how to deal with this one?
>>  
>> All the best
>>  
>> Dino Ienco, PhD
>> Department of Computer Science
>> University of Turin
>> C.so Svizzera 185
>> 10149 - Turin
>> Italy
>>
>> Phone +39 011 67 06 839
>> Fax +39 011 75 16 03
>> e-mail [hidden email]
>> web http://www.di.unito.it/~ienco
>>
>> ------------------------------------------------------------------------------
>>
>>
>> _______________________________________________
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>> [hidden email]
>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>
>>
>>
>>
>> --
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