Re: JBrowse problem with annotation

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Re: JBrowse problem with annotation

This is called the feature density histogram. It helps to summarize the density of the gene annotations in a region instead of loading all the 1000s of features at once.

You can set "style": { "histScale": 0.00000000001 } or some arbitrarily small value to not show the histograms (i found 0 does not work...). Then instead of histograms, you will get a message that says "Too much data to show" when there is literally too much data to show on the screen.

The jbrowse configuration guide has more details on this


On Wed, Jul 2, 2014 at 8:00 AM, rahmanr <[hidden email]> wrote:
Hello all,
           I have configured JBrowse with mm10 and I used the ensemble annotations for mm10. When I select a chromosome it displays bars instead of the annotations as shown in the attachment1. But the strange thing is that when I zoom in and then zoom out it shows the correct annotations as shown in the attachment2.

Any suggestions?

thanks in advance

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