Re: Jbrowse Set Up Error

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Re: Jbrowse Set Up Error

Dave Clements, GMOD Help Desk-3
Hi Minh,

I'm CC'ing the JBrowse list as people there may have additional suggestions.

My guess is that JSON.pm was not installed on the system, or if it was installed, it's in a place that is not in @INC.  A common cause of this is installing JSON.pm as a regular user, rather than as root.

If you haven't already done so, please install JSON with CPAN.

Dave C.

On Thu, Jul 15, 2010 at 10:09 AM, <[hidden email]> wrote:
Hi,
I am trying to set up Jbrowse on my Ubuntu Local Server.
I follow this guide http://gmod.org/wiki/JBrowse_Tutorial. After I install everything, I run this command in my terminal:
"bin/flatfile-to-json.pl" and get the following message.

Can't locate JSON.pm in @INC (@INC contains: /var/www/jbrowse/bin/../lib /etc/perl /usr/local/lib/perl/5.10.1 /usr/local/share/perl/5.10.1 /usr/lib/perl5 /usr/share/perl5 /usr/lib/perl/5.10 /usr/share/perl/5.10 /usr/local/lib/site_perl .) at /var/www/jbrowse/bin/../lib/JsonGenerator.pm line 10.
BEGIN failed--compilation aborted at /var/www/jbrowse/bin/../lib/JsonGenerator.pm line 10.
Compilation failed in require at /var/www/jbrowse/bin/flatfile-to-json.pl line 13.
BEGIN failed--compilation aborted at /var/www/jbrowse/bin/flatfile-to-json.pl line 13.


Could you show me how to fix this???



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