Re: 答复: KEGG

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Re: 答复: KEGG

Stephen Ficklin-2
Hi Zhensheng,

If your KEGG file loaded properly then the last step is to update the 'kegg_by_organism' materialized view.  I just realized that this step was missing from the Tutorial, so I added it (http://gmod.org/wiki/Tripal_Tutorial_(v0.3.1b)#Loading_KEGG_Analysis_Results). 


Stephen

On 9/19/2011 3:31 AM, 陈镇生 wrote:
Hi Stephen,

I get the
heir.tar.gz file by using the KAAS server,and load it into Tripal. But the
KEGG Analysis Reports :There are no KEGG reports available

The terminal message:
Calling: tripal_analysis_kegg_parseHierFile(70, /home/dell/hier, http://172.16.74.57/drupal, , mRNA, 1, 201)
There are 42 keg file(s).
Parsing /home/dell/hier/q00001.keg
Parsing /home/dell/hier/q04812.keg
Parsing /home/dell/hier/q01004.keg
Parsing /home/dell/hier/q04091.keg
Parsing /home/dell/hier/q01001.keg
Parsing /home/dell/hier/q01002.keg
Parsing /home/dell/hier/q04031.keg
Parsing /home/dell/hier/q01005.keg
Parsing /home/dell/hier/q03009.keg
Parsing /home/dell/hier/q04090.keg
Parsing /home/dell/hier/q04121.keg
Parsing /home/dell/hier/q01020.keg
Parsing /home/dell/hier/q03036.keg
Parsing /home/dell/hier/q02042.keg
Parsing /home/dell/hier/q04050.keg
Parsing /home/dell/hier/q04131.keg
Parsing /home/dell/hier/q03011.keg
Parsing /home/dell/hier/q04030.keg
Parsing /home/dell/hier/q03110.keg
Parsing /home/dell/hier/q03041.keg
Parsing /home/dell/hier/q00535.keg
Parsing /home/dell/hier/q03400.keg
Parsing /home/dell/hier/q01000.keg
Parsing /home/dell/hier/q01006.keg
Parsing /home/dell/hier/q02000.keg
Parsing /home/dell/hier/q01007.keg
Parsing /home/dell/hier/q00194.keg
Parsing /home/dell/hier/q02035.keg
Parsing /home/dell/hier/q04040.keg
Parsing /home/dell/hier/q02022.keg
Parsing /home/dell/hier/q03310.keg
Parsing /home/dell/hier/q03051.keg
Parsing /home/dell/hier/q00199.keg
Parsing /home/dell/hier/q03000.keg
Parsing /home/dell/hier/q04516.keg
Parsing /home/dell/hier/q03032.keg
Parsing /home/dell/hier/q04515.keg
Parsing /home/dell/hier/q04052.keg
Parsing /home/dell/hier/q03021.keg
Parsing /home/dell/hier/q02044.keg
Parsing /home/dell/hier/q01003.keg
Parsing /home/dell/hier/q03012.keg
Done.

How to make it show the KEGG Analysis Reports?

Thanks
Zhensheng




发件人: Stephen Ficklin [[hidden email]]
发送时间: 2011年9月15日 21:46
到: 陈镇生
主题: Re: KEGG

Hi Zhensheng,

The heir.tar.gz file is generated by using the KAAS server:  http://www.genome.ad.jp/tools/kaas/

You upload a FASTA file of protein of nucleotide gene sequences and it will annotated those sequences with KEGG terms.  Once complete you can download the results in a heir.tar.gz file.  This is all you need to upload your results.

Stephen

On 9/15/2011 8:55 AM, 陈镇生 wrote:
Hi Stephen,

What is the KASS hier.tar.gz? Could you give me an example?

Thanks
zhensheng




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