Re: MAKER Error ; BLASTX does not appear to be finished in Widget::blastx::keepers

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Re: MAKER Error ; BLASTX does not appear to be finished in Widget::blastx::keepers

Carson Holt
MAKER auto-retries after any failure. It looks like something happened to BLAST and then it retried. No indication that anything went wrong the second time. You can check the datastore logs to see if the contigs status is listed as FINISHED.

—Carson

> On Apr 17, 2018, at 1:01 AM, shaf <[hidden email]> wrote:
>
> Greetings,
> I have encountered a problem while running my data (this is the 17th chromosome) and this is my first time having an error regarding BLASTX.
>
> Here is the error message that I've got.
>
> ERROR: BLASTX does not appear to be finished in Widget::blastx::keepers
> --> rank=NA, hostname=Lee-Server
> --> rank=NA, hostname=Lee-Server
> --> rank=NA, hostname=Lee-Server
> --> rank=NA, hostname=Lee-Server
> ERROR: Failed while doing blastx repeats
> ERROR: Chunk failed at level:1, tier_type:1
> FAILED CONTIG:NL_CHR06
>
> ERROR: Chunk failed at level:2, tier_type:0
> FAILED CONTIG:NL_CHR06
>
> examining contents of the fasta file and run log
>
>
>
> --Next Contig--
>
> Processing run.log file...
> MAKER WARNING: The file NL_CHR06.maker.output/NL_CHR06_datastore/5C/FD/NL_CHR06//theVoid.NL_CHR06/85/NL_CHR06.852.te_proteins%2Efasta.repeatrunner
> did not finish on the last run and must be erased
>
>
> Maker is now finished!!!
>
>
>
> Start_time: 1523915201
> End_time:   1523932745
> Elapsed:    17544
>
> Do you have any suggestion how to fix this problem?Thanks in advance.
>
> Regard,
> Shaf

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