Re: Need help in setting up intermine

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Re: Need help in setting up intermine

Julie Sullivan
Hi Manjula

Here is the relevant part of the tutorial:

http://intermine.readthedocs.org/en/latest/get-started/tutorial/#creating-a-database

$ ant clean build-db

Copy and paste that command, and try to run that?

The `clean` target removes temporary directories, and `build-db` builds
the database. We don't have a `build` target.

Here are the docs on the various ant targets we use:

http://intermine.readthedocs.org/en/latest/system-requirements/software/ant/#common-ant-targets

Cheers
Julie

On 05/11/14 11:22, Manjula P Thimma wrote:

> Dear Intermine team,
>
> We are trying to establish a intermine for our laboratory.
>
> We have installed intermine on Ubuntu 13.04, with Postgresql 9.3,
> Tomcat7.x and Perl5.18 etc.
>
> While following up with the tutorial, I got stuck up at point "Creating
> database" under malariamine/dbmodel folder.
>
> When I run "ant build clean", the 'build' folder is not created. Rather
> there is the following error thrown.
>
>
>   ant clean build
> Buildfile: /home/thimmamp/intermine/malariamine/dbmodel/build.xml
>
> -pre-clean:
>
> -init-project:
>
> -pre-pre-init:
>
> library.-pre-init:
>
> model.-pre-init:
>      [mkdir] Created dir:
> /home/thimmamp/intermine/malariamine/dbmodel/build/model
>
> -pre-init:
>      [mkdir] Created dir:
> /home/thimmamp/intermine/malariamine/dbmodel/build/classes
>
> clean:
>     [delete] Deleting directory
> /home/thimmamp/intermine/malariamine/dbmodel/build
>
> BUILD FAILED
> Target "build" does not exist in the project "malariamine-dbmodel".
>
> Total time: 0 seconds
>
>
> Could you please help us get around this?
>
> Best Regards,
> Manjula Thimma
>
> ________________________________
>
> This message and its contents including attachments are intended solely
> for the original recipient. If you are not the intended recipient or
> have received this message in error, please notify me immediately and
> delete this message from your computer system. Any unauthorized use or
> distribution is prohibited. Please consider the environment before
> printing this email.
>

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Re: Need help in setting up intermine

Manjula P Thimma
Thanks very much for such speedy reply!

Now it is running!

On 11/05/2014 02:28 PM, Julie Sullivan wrote:

> Hi Manjula
>
> Here is the relevant part of the tutorial:
>
> http://intermine.readthedocs.org/en/latest/get-started/tutorial/#creating-a-database
>
>
> $ ant clean build-db
>
> Copy and paste that command, and try to run that?
>
> The `clean` target removes temporary directories, and `build-db`
> builds the database. We don't have a `build` target.
>
> Here are the docs on the various ant targets we use:
>
> http://intermine.readthedocs.org/en/latest/system-requirements/software/ant/#common-ant-targets
>
>
> Cheers
> Julie
>
> On 05/11/14 11:22, Manjula P Thimma wrote:
>> Dear Intermine team,
>>
>> We are trying to establish a intermine for our laboratory.
>>
>> We have installed intermine on Ubuntu 13.04, with Postgresql 9.3,
>> Tomcat7.x and Perl5.18 etc.
>>
>> While following up with the tutorial, I got stuck up at point "Creating
>> database" under malariamine/dbmodel folder.
>>
>> When I run "ant build clean", the 'build' folder is not created. Rather
>> there is the following error thrown.
>>
>>
>>   ant clean build
>> Buildfile: /home/thimmamp/intermine/malariamine/dbmodel/build.xml
>>
>> -pre-clean:
>>
>> -init-project:
>>
>> -pre-pre-init:
>>
>> library.-pre-init:
>>
>> model.-pre-init:
>>      [mkdir] Created dir:
>> /home/thimmamp/intermine/malariamine/dbmodel/build/model
>>
>> -pre-init:
>>      [mkdir] Created dir:
>> /home/thimmamp/intermine/malariamine/dbmodel/build/classes
>>
>> clean:
>>     [delete] Deleting directory
>> /home/thimmamp/intermine/malariamine/dbmodel/build
>>
>> BUILD FAILED
>> Target "build" does not exist in the project "malariamine-dbmodel".
>>
>> Total time: 0 seconds
>>
>>
>> Could you please help us get around this?
>>
>> Best Regards,
>> Manjula Thimma
>>
>> ________________________________
>>
>> This message and its contents including attachments are intended solely
>> for the original recipient. If you are not the intended recipient or
>> have received this message in error, please notify me immediately and
>> delete this message from your computer system. Any unauthorized use or
>> distribution is prohibited. Please consider the environment before
>> printing this email.
>>


________________________________

This message and its contents including attachments are intended solely for the original recipient. If you are not the intended recipient or have received this message in error, please notify me immediately and delete this message from your computer system. Any unauthorized use or distribution is prohibited. Please consider the environment before printing this email.

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