Re: Possible precedence issue with control flow operator at /apps/maker/3.01.03/lib/site_perl/5.26.2/Bio/DB/IndexedBase.pm line 805
The problem is the bioperl or even perl installation —> “Possible precedence issue with control flow operator at /apps/maker/3.01.03/lib/site_perl/5.26.2/Bio/DB/IndexedBase.pm line 805."
You may have a custom install of perl without BerkleyDB setup, or need to update BioPerl. If you installed MAKER with MiniConda, then it tried to setup a custom perl and BioPerl that is broken. You probably need to reinstall MAKER. Using the system perl may be the easiest.
On Dec 9, 2020, at 9:14 AM, Gumbi,Bonginkosi C <[hidden email]> wrote:
Dear maker support team
I need your help to troubleshoot this error. I don't know what I'm doing wrong, this is my first time annotating a genome. I have gone through almost three maker tutorials online but it's like the annotation doesn't generate the datastore folder and I don't know why because I have provided all the input files. I am running this analysis on the cluster platform. Below I have pasted the slurm script and the error message. Any suggestions and help would be highly appropriated.