I'm a postdoc at the Unversity of Oregon. I've configured a server to run Apollo and I really appreciate all over your work creating such an awesome plugin. The lab I'm in works with microRNA and we are trying to blast/blat small oligos to our nematode genomes. In the source code I noticed some java bits about blast and I'm wondering if (and how) it's possible to use the blast program for searching the genomes instead of blat.
Any help would be great.
Tyler D Hether, PhD
Institute of Ecology and Evolution
335 Pacific Hall
5289 University of Oregon
Eugene, OR 97403-5289
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