Re: how to do an enrichment analysis in Galaxy

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Re: how to do an enrichment analysis in Galaxy

Anton Nekrutenko
Binnaz:

Please, in the future forward such questions to [hidden email] mailing list. This is the most reliable way to get your queries answered.

If you carefully go through http://usegalaxy.org/galaxy101 you will see how to count occurrences of features (such as LINES) within genomic ranges (such as (ChrX:144,000,000-146,500,000)).

Thanks!

anton



Anton Nekrutenko
http://nekrut.bx.psu.edu
http://usegalaxy.org



On Apr 19, 2012, at 12:53 PM, Binnaz Yalcin wrote:

> Dear Anton,
>
> Can I do an anrichment analysis in Galaxy? if so, how?
>
> I want to know whether a region on mouse chromosome X (ChrX:144,000,000-146,500,000 bp) is enriched with LINE elements, compared to the rest of the chromosome X.
>
> Any advice would be much more appreciated.
>
> Thanks
>
> Best,
> Binnaz YALCIN
>


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