Re: how to do an enrichment analysis in Galaxy

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Re: how to do an enrichment analysis in Galaxy

Anton Nekrutenko

Please, in the future forward such questions to [hidden email] mailing list. This is the most reliable way to get your queries answered.

If you carefully go through you will see how to count occurrences of features (such as LINES) within genomic ranges (such as (ChrX:144,000,000-146,500,000)).



Anton Nekrutenko

On Apr 19, 2012, at 12:53 PM, Binnaz Yalcin wrote:

> Dear Anton,
> Can I do an anrichment analysis in Galaxy? if so, how?
> I want to know whether a region on mouse chromosome X (ChrX:144,000,000-146,500,000 bp) is enriched with LINE elements, compared to the rest of the chromosome X.
> Any advice would be much more appreciated.
> Thanks
> Best,
> Binnaz YALCIN

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