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MAKER on its own can run under MPI to run on multiple cores or across multiple machines on a local computer cluster. It can also restart as long as you run in the same directory. However when controlled by Galaxy I do not know if the restart is possible since Galaxy controls the run directory. Similarly I don’t know if Galaxy can launch it via MPI.
I have a local galaxy instance and installed maker through the tool shed. I have been running it on a large genome and it had been running on one core for a few weeks. Then my IT guys needed to take the server down so stopped the run.
I wonder if I can restart it - I have all the intermediate files in my /galaxy/database/jobs_directory and also, is there a way to run it on multiple cores?
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