Set up flymine mirror

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Set up flymine mirror

it
Hi,
    Can anybody know how long post process step will take to finish while setup a flymine mirror.

Thanks & Regards,
Lenin

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Re: Set up flymine mirror

Julie Sullivan
Hi Lenin

Post processing time depends on which processes you're running and how fast your
server is.

On our machines, it usually takes a couple of hours - here are the build times
for FlyMine:

update-publications                                      688
update-publications-dump                                 540
create-utr-references                                     31
create-references                                        223
make-spanning-locations                                  226
create-chromosome-locations-and-lengths                  200
create-intergenic-region-features                         45
transfer-sequences                                       158
create-overlap-relations-flymine                         429
create-overlap-relations-flymine-dump                    554
do-sources                                               461
create-intron-features                                    27
create-bioseg-location-index                              69
create-overlap-view                                       10
create-attribute-indexes                                 141
summarise-objectstore                                   3877
create-autocomplete-index                                 26
create-search-index                                     1060
final-dump                                              2213

total                                                  24432

Does that help you?  Andrew was having problems with the "summarise-objectstore"
process taking too long, but Richard has now fixed that issue.

Julie

On 06/01/12 05:23, [hidden email] wrote:

> Hi,
> Can anybody know how long post process step will take to finish while setup a
> flymine mirror.
>
> Thanks&  Regards,
> Lenin
>
>
>
> _______________________________________________
> dev mailing list
> [hidden email]
> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev

_______________________________________________
dev mailing list
[hidden email]
http://mail.intermine.org/cgi-bin/mailman/listinfo/dev