Show history structure : Error 'Undefined' object is not callable

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Show history structure : Error 'Undefined' object is not callable

julie dubois
Hi all,
I'm on 17.05 galaxy version and display it on firefox.
I'm trying to use "show structure" functionnality on my histories
(I've never tried before this version) and I obtain this error :


URL: http://192.168.100.98:8080/galaxy/history/display_structured
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/weberror/evalexception.py',
line 431 in respond
  app_iter = self.application(environ, detect_start_response)
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/recursive.py',
line 85 in __call__
  return self.application(environ, start_response)
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/httpexceptions.py',
line 640 in __call__
  return self.application(environ, start_response)
File '/data/galaxy-dist/lib/galaxy/web/framework/base.py', line 135 in __call__
  return self.handle_request( environ, start_response )
File '/data/galaxy-dist/lib/galaxy/web/framework/base.py', line 214 in
handle_request
  body = method( trans, **kwargs )
File '/data/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/history.py',
line 571 in display_structured
  return trans.fill_template( "history/display_structured.mako",
items=items, history=history )
File '/data/galaxy-dist/lib/galaxy/web/framework/webapp.py', line 891
in fill_template
  return self.fill_template_mako( filename, **kwargs )
File '/data/galaxy-dist/lib/galaxy/web/framework/webapp.py', line 905
in fill_template_mako
  return template.render( **data )
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/mako/template.py',
line 445 in render
  return runtime._render(self, self.callable_, args, data)
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/mako/runtime.py',
line 829 in _render
  **_kwargs_for_callable(callable_, data))
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/mako/runtime.py',
line 864 in _render_context
  _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/mako/runtime.py',
line 890 in _exec_template
  callable_(context, *args, **kwargs)
File '/data/galaxy-dist/database/compiled_templates/base.mako.py',
line 63 in render_body
  __M_writer(unicode(next.body()))
File '/data/galaxy-dist/database/compiled_templates/history/display_structured.mako.py',
line 50 in render_body
  __M_writer(unicode(render_item( entity, children )))
File '/data/galaxy-dist/database/compiled_templates/history/display_structured.mako.py',
line 35 in render_item
  return render_render_item(context._locals(__M_locals),entity,children)
File '/data/galaxy-dist/database/compiled_templates/history/display_structured.mako.py',
line 191 in render_render_item
  render_item_job( entity, children )
File '/data/galaxy-dist/database/compiled_templates/history/display_structured.mako.py',
line 183 in render_item_job
  return render_render_item_job(context,job,children)
File '/data/galaxy-dist/database/compiled_templates/history/display_structured.mako.py',
line 239 in render_render_item_job
  __M_writer(unicode( show_params.inputs_recursive( tool.inputs,
params_object, depth=1 ) ))
File '/data/galaxy-dist/database/compiled_templates/show_params.mako.py',
line 293 in render_inputs_recursive
  for i, element in enumerate(listify(param_values[input.name])):
TypeError: 'Undefined' object is not callable


Is it a problem with this history (I've tested with a full green
history and with history containing red jobs without difference in
error message) or with my galaxy configuration may be ?

Thanks.


Julie
___________________________________________________________
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Re: Show history structure : Error 'Undefined' object is not callable

Marius van den Beek
Hi Julie,

thanks for reporting this, this is indeed broken.

Best,
Marius

On 12 October 2017 at 14:53, julie dubois <[hidden email]> wrote:
Hi all,
I'm on 17.05 galaxy version and display it on firefox.
I'm trying to use "show structure" functionnality on my histories
(I've never tried before this version) and I obtain this error :


URL: http://192.168.100.98:8080/galaxy/history/display_structured
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/weberror/evalexception.py',
line 431 in respond
  app_iter = self.application(environ, detect_start_response)
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/recursive.py',
line 85 in __call__
  return self.application(environ, start_response)
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/paste/httpexceptions.py',
line 640 in __call__
  return self.application(environ, start_response)
File '/data/galaxy-dist/lib/galaxy/web/framework/base.py', line 135 in __call__
  return self.handle_request( environ, start_response )
File '/data/galaxy-dist/lib/galaxy/web/framework/base.py', line 214 in
handle_request
  body = method( trans, **kwargs )
File '/data/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/history.py',
line 571 in display_structured
  return trans.fill_template( "history/display_structured.mako",
items=items, history=history )
File '/data/galaxy-dist/lib/galaxy/web/framework/webapp.py', line 891
in fill_template
  return self.fill_template_mako( filename, **kwargs )
File '/data/galaxy-dist/lib/galaxy/web/framework/webapp.py', line 905
in fill_template_mako
  return template.render( **data )
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/mako/template.py',
line 445 in render
  return runtime._render(self, self.callable_, args, data)
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/mako/runtime.py',
line 829 in _render
  **_kwargs_for_callable(callable_, data))
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/mako/runtime.py',
line 864 in _render_context
  _exec_template(inherit, lclcontext, args=args, kwargs=kwargs)
File '/data/galaxy-dist/.venv/local/lib/python2.7/site-packages/mako/runtime.py',
line 890 in _exec_template
  callable_(context, *args, **kwargs)
File '/data/galaxy-dist/database/compiled_templates/base.mako.py',
line 63 in render_body
  __M_writer(unicode(next.body()))
File '/data/galaxy-dist/database/compiled_templates/history/display_structured.mako.py',
line 50 in render_body
  __M_writer(unicode(render_item( entity, children )))
File '/data/galaxy-dist/database/compiled_templates/history/display_structured.mako.py',
line 35 in render_item
  return render_render_item(context._locals(__M_locals),entity,children)
File '/data/galaxy-dist/database/compiled_templates/history/display_structured.mako.py',
line 191 in render_render_item
  render_item_job( entity, children )
File '/data/galaxy-dist/database/compiled_templates/history/display_structured.mako.py',
line 183 in render_item_job
  return render_render_item_job(context,job,children)
File '/data/galaxy-dist/database/compiled_templates/history/display_structured.mako.py',
line 239 in render_render_item_job
  __M_writer(unicode( show_params.inputs_recursive( tool.inputs,
params_object, depth=1 ) ))
File '/data/galaxy-dist/database/compiled_templates/show_params.mako.py',
line 293 in render_inputs_recursive
  for i, element in enumerate(listify(param_values[input.name])):
TypeError: 'Undefined' object is not callable


Is it a problem with this history (I've tested with a full green
history and with history containing red jobs without difference in
error message) or with my galaxy configuration may be ?

Thanks.


Julie
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/


___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/