Translation tables

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Translation tables

Tom Harrop
Hi all,

Is it possible to specify different translation tables (genetic code)
for different organisms in the same Apollo instance, e.g. using a
parameter in the json file?

Cheers,

Tom





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Re: Translation tables

nathandunn

Short answer is that its not implemented, but it is on the todo list (though I’m not sure when):


If its something you want to work on, we would love a PR on it.   Would be happy to point you in the right direction on this if so.  

Nathan

On Jul 23, 2017, at 6:27 PM, Tom Harrop <[hidden email]> wrote:

Hi all,

Is it possible to specify different translation tables (genetic code) for different organisms in the same Apollo instance, e.g. using a parameter in the json file?

Cheers,

Tom




This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/
If you wish to unsubscribe from the Apollo List: 1. From the address with which you subscribed to the list, send a message to [hidden email] | 2. In the subject line of your email type: unsubscribe apollo | 3. Leave the message body blank.






This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/
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Re: Translation tables

nathandunn
In reply to this post by Tom Harrop

Just an FYI on the follow-up.   This should go into master soon.  Feel free if anyone wants to comment / test this PR:


Nathan

On Jul 23, 2017, at 6:27 PM, Tom Harrop <[hidden email]> wrote:

Hi all,

Is it possible to specify different translation tables (genetic code) for different organisms in the same Apollo instance, e.g. using a parameter in the json file?

Cheers,

Tom




This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/
If you wish to unsubscribe from the Apollo List: 1. From the address with which you subscribed to the list, send a message to [hidden email] | 2. In the subject line of your email type: unsubscribe apollo | 3. Leave the message body blank.






This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/
If you wish to unsubscribe from the Apollo List: 1. From the address with which you subscribed to the list, send a message to [hidden email] | 2. In the subject line of your email type: unsubscribe apollo | 3. Leave the message body blank.

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