Using multiple EST sets

[Shane Brubaker]

Hi, can Maker take multiple sets of ESTs as an input?  And if so, how do you do it?  I've tried putting multiple lines beginning with "est:" and also putting multiple files on the same "est:" line in the opts file, but I seem to get errors.

Thanks,
Shane

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[Carson Hinton Holt]

Right now you need to combine them into a single fasta file.  I plan on giving MAKER support for a comma seperated list of multiple files in the future.  For now either use a command line like ‘cat *.fasta > combined.fasta’ or you can use the MAKER accessory script fasta_merge.

Thanks,
Carson


On 5/26/10 11:14 AM, "Shane Brubaker" <SBrubaker@...> wrote:

Hi, can Maker take multiple sets of ESTs as an input?  And if so, how do you do it?  I've tried putting multiple lines beginning with "est:" and also putting multiple files on the same "est:" line in the opts file, but I seem to get errors.

Thanks,
Shane

This email and any attachments thereto may contain private, confidential, and privileged material for the sole use of the intended recipient.  Any review, copying, or distribution of this email (or any attachments thereto) by others is strictly prohibited.  If you are not the intended recipient, please contact the sender immediately and permanently delete the original and any copies of this email and any attachments thereto.

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