Where's BlueGenes?

classic Classic list List threaded Threaded
3 messages Options
Reply | Threaded
Open this post in threaded view
|

Where's BlueGenes?

Sam Hokin-3
I thought I'd give the built-in BlueGenes server startup a run, but it can't seem to find the code, at least not the version that's
indicated in the flymine gradle.properties, which is bluegenes:0.9.9-SNAPSHOT. I also tried 1.0.+. I'm running IM 3.1.2 with the
latest dev updates.

[shokin@shokin-mines beanmine]$ ./gradlew blueGenesStart
To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon:
https://docs.gradle.org/4.1/userguide/gradle_daemon.html.
Daemon will be stopped at the end of the build stopping after processing

 > Configure project :
Using properties file: '/home/shokin/.intermine/beanmine.properties'
cleaning
deleting idresolver cache
deleting datasources.xml
deleting organisms.xml
deleting publications.xml
deleted log files

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':webapp:blueGenesStart'.
 > Could not resolve all files for configuration ':webapp:onlyRunTime'.
    > Could not find org.intermine:bluegenes:0.9.9-SNAPSHOT.
      Searched in the following locations:
          file:/home/shokin/.m2/repository/org/intermine/bluegenes/0.9.9-SNAPSHOT/maven-metadata.xml
          file:/home/shokin/.m2/repository/org/intermine/bluegenes/0.9.9-SNAPSHOT/bluegenes-0.9.9-SNAPSHOT.pom
          file:/home/shokin/.m2/repository/org/intermine/bluegenes/0.9.9-SNAPSHOT/bluegenes-0.9.9-SNAPSHOT.jar
          https://jcenter.bintray.com/org/intermine/bluegenes/0.9.9-SNAPSHOT/maven-metadata.xml
          https://jcenter.bintray.com/org/intermine/bluegenes/0.9.9-SNAPSHOT/bluegenes-0.9.9-SNAPSHOT.pom
          https://jcenter.bintray.com/org/intermine/bluegenes/0.9.9-SNAPSHOT/bluegenes-0.9.9-SNAPSHOT.jar
 
http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo/org/intermine/bluegenes/0.9.9-SNAPSHOT/maven-metadata.xml
 
http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo/org/intermine/bluegenes/0.9.9-SNAPSHOT/bluegenes-0.9.9-SNAPSHOT.pom
 
http://www.ebi.ac.uk/intact/maven/nexus/content/repositories/ebi-repo/org/intermine/bluegenes/0.9.9-SNAPSHOT/bluegenes-0.9.9-SNAPSHOT.jar
      Required by:
          project :webapp

* Try:
Run with --stacktrace option to get the stack trace. Run with --info or --debug option to get more log output.

* Get more help at https://help.gradle.org

BUILD FAILED in 9s
1 actionable task: 1 executed
_______________________________________________
dev mailing list
[hidden email]
https://lists.intermine.org/mailman/listinfo/dev
Reply | Threaded
Open this post in threaded view
|

Re: Where's BlueGenes?

Sam Hokin-3
Ah, found it on Maven Central.

systemProp.blueGenesVersion=0.9.9 (no -SNAPSHOT)

compile group: 'org.intermine', name: 'bluegenes', version: '0.9.9'

maven {
        url 'http://clojars.org/repo/'
}

The BlueGenes is here:

http://dev.lis.ncgr.org:50031/#/

if you're curious.

This may reveal some stuff: I normally post a mine to a separate Tomcat server, but the blueGenesStart task put it on my local build
server on port 5000. To reach it, I proxy from a publicly-accessible server, as you see above using port 50031.

So far, Search seems to not work, but templates work. The associated BeanMine is

http://dev.lis.ncgr.org:50030/beanmine/begin.do

On 4/2/19 3:12 PM, Sam Hokin wrote:
> I thought I'd give the built-in BlueGenes server startup a run, but it can't seem to find the code, at least not the version that's
> indicated in the flymine gradle.properties, which is bluegenes:0.9.9-SNAPSHOT. I also tried 1.0.+. I'm running IM 3.1.2 with the
> latest dev updates.
_______________________________________________
dev mailing list
[hidden email]
https://lists.intermine.org/mailman/listinfo/dev
Reply | Threaded
Open this post in threaded view
|

Re: Where's BlueGenes?

Sam Hokin-3
Oh, nevermind, it's hardcoded to run the production BeanMine. I think I learned at the workshop how to change that....

On 4/2/19 3:31 PM, Sam Hokin wrote:

> Ah, found it on Maven Central.
>
> systemProp.blueGenesVersion=0.9.9 (no -SNAPSHOT)
>
> compile group: 'org.intermine', name: 'bluegenes', version: '0.9.9'
>
> maven {
>      url 'http://clojars.org/repo/'
> }
>
> The BlueGenes is here:
>
> http://dev.lis.ncgr.org:50031/#/
>
> if you're curious.
>
> This may reveal some stuff: I normally post a mine to a separate Tomcat server, but the blueGenesStart task put it on my local build
> server on port 5000. To reach it, I proxy from a publicly-accessible server, as you see above using port 50031.
>
> So far, Search seems to not work, but templates work. The associated BeanMine is
>
> http://dev.lis.ncgr.org:50030/beanmine/begin.do
>
> On 4/2/19 3:12 PM, Sam Hokin wrote:
>> I thought I'd give the built-in BlueGenes server startup a run, but it can't seem to find the code, at least not the version
>> that's indicated in the flymine gradle.properties, which is bluegenes:0.9.9-SNAPSHOT. I also tried 1.0.+. I'm running IM 3.1.2
>> with the latest dev updates.
_______________________________________________
dev mailing list
[hidden email]
https://lists.intermine.org/mailman/listinfo/dev