alignments?

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alignments?

Sofia Robb
Something is weird. Not only do I not get alignments for my expressed_sequence_match, but i don't get them for a gene/mrna I load by gff. What is going on?



v31.008456 maker gene 11845 13020 . - . ID=SmedSxl_v31.008456_smed_20140614-gene-0.1;Name=SmedSxl_v31.008456_smed_20140614-gene-0.1;score=3581
v31.008456 maker mRNA 11845 13020 3581 - . ID=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1;Parent=SmedSxl_v31.008456_smed_20140614-gene-0.1;Name=SMED30010864:1;_AED=1.00;_eAED=1.00;_QI=509|0|0|0|1|1|4|181|73;score=3581;Alias=SMED30010864
v31.008456 maker exon 11845 12194 . - . ID=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1:exon:7669;Parent=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1
v31.008456 maker exon 12339 12628 . - . ID=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1:exon:7668;Parent=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1
v31.008456 maker exon 12695 12832 . - . ID=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1:exon:7667;Parent=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1
v31.008456 maker exon 12887 13020 . - . ID=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1:exon:7666;Parent=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1
v31.008456 maker five_prime_UTR 12887 13020 . - . ID=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1:five_prime_utr-1;Parent=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1
v31.008456 maker five_prime_UTR 12695 12832 . - . ID=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1:five_prime_utr-2;Parent=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1
v31.008456 maker five_prime_UTR 12392 12628 . - . ID=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1:five_prime_utr;Parent=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1
v31.008456 maker CDS 12339 12391 . - 0 ID=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1:cds-1;Parent=SmedSxl_v31.008456_smed_20140614-gene-0.1-mRNA-1

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