[biomart-users] Biomart error: "Extra content at end of document"

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[biomart-users] Biomart error: "Extra content at end of document"

Stephen Hwang
Trying to use biomaRt and I get the following error: 

> ensembl=useMart(host='feb2014.archive.ensembl.org', biomart='ENSEMBL_MART_ENSEMBL', dataset="hsapiens_gene_ensembl")
Extra content at the end of the document
Error: 1: Extra content at the end of the document

Is this indicative that a new archive is to be used or is it just temporarily unavailable?

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Re: [biomart-users] Biomart error: "Extra content at end of document"

Thomas Maurel
Dear Stephen,

I am afraid we experienced a power failure affecting many of our servers yesterday and some of our archive websites are still down at the moment.
We are looking into this and I will email as soon as the archive is back online.

Apologies for any inconvenienced caused.
Regards,
Thomas
On 1 Jun 2015, at 22:45, Stephen Hwang <[hidden email]> wrote:

Trying to use biomaRt and I get the following error: 

> ensembl=useMart(host='feb2014.archive.ensembl.org', biomart='ENSEMBL_MART_ENSEMBL', dataset="hsapiens_gene_ensembl")
Extra content at the end of the document
Error: 1: Extra content at the end of the document

Is this indicative that a new archive is to be used or is it just temporarily unavailable?

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Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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Re: [biomart-users] Biomart error: "Extra content at end of document"

Thomas Maurel
Dear Stephen,

Just to let you know that most of our archives including feb2014 are now back online.

Regards,
Thomas
On 2 Jun 2015, at 09:22, Thomas Maurel <[hidden email]> wrote:

Dear Stephen,

I am afraid we experienced a power failure affecting many of our servers yesterday and some of our archive websites are still down at the moment.
We are looking into this and I will email as soon as the archive is back online.

Apologies for any inconvenienced caused.
Regards,
Thomas
On 1 Jun 2015, at 22:45, Stephen Hwang <[hidden email]> wrote:

Trying to use biomaRt and I get the following error: 

> ensembl=useMart(host='feb2014.archive.ensembl.org', biomart='ENSEMBL_MART_ENSEMBL', dataset="hsapiens_gene_ensembl")
Extra content at the end of the document
Error: 1: Extra content at the end of the document

Is this indicative that a new archive is to be used or is it just temporarily unavailable?

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Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom


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European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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Re: [biomart-users] Biomart error: "Extra content at end of document"

Stephen Hwang
Mr. Maurel,

No apologies needed. Thank you for keeping us updated. 

On Tuesday, June 2, 2015 at 5:37:54 AM UTC-4, Thomas Maurel wrote:
Dear Stephen,

Just to let you know that most of our archives including feb2014 are now back online.

Regards,
Thomas
On 2 Jun 2015, at 09:22, Thomas Maurel <<a href="javascript:" target="_blank" gdf-obfuscated-mailto="RZY0SA7VfLYJ" rel="nofollow" onmousedown="this.href='javascript:';return true;" onclick="this.href='javascript:';return true;">mau...@...> wrote:

Dear Stephen,

I am afraid we experienced a power failure affecting many of our servers yesterday and some of our archive websites are still down at the moment.
We are looking into this and I will email as soon as the archive is back online.

Apologies for any inconvenienced caused.
Regards,
Thomas
On 1 Jun 2015, at 22:45, Stephen Hwang <<a href="javascript:" target="_blank" gdf-obfuscated-mailto="RZY0SA7VfLYJ" rel="nofollow" onmousedown="this.href='javascript:';return true;" onclick="this.href='javascript:';return true;">yj0...@...> wrote:

Trying to use biomaRt and I get the following error: 

> ensembl=useMart(host='<a href="http://feb2014.archive.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href='http://www.google.com/url?q\75http%3A%2F%2Ffeb2014.archive.ensembl.org%2F\46sa\75D\46sntz\0751\46usg\75AFQjCNFlIg-WinEM851GBuRhvWAsqvSyiw';return true;" onclick="this.href='http://www.google.com/url?q\75http%3A%2F%2Ffeb2014.archive.ensembl.org%2F\46sa\75D\46sntz\0751\46usg\75AFQjCNFlIg-WinEM851GBuRhvWAsqvSyiw';return true;">feb2014.archive.ensembl.org', biomart='ENSEMBL_MART_ENSEMBL', dataset="hsapiens_gene_ensembl")
Extra content at the end of the document
Error: 1: Extra content at the end of the document

Is this indicative that a new archive is to be used or is it just temporarily unavailable?

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Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom


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Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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Re: [biomart-users] Biomart error: "Extra content at end of document"

mjgommo
Hi,

I am getting the same error message now:

    Connect To BioMart at aug2014.archive.ensembl.org
    Extra content at the end of the document
    Error: 1: Extra content at the end of the document

Could it happen that some some archive websites are currently down?

Best regards,


El martes, 2 de junio de 2015, 16:14:17 (UTC+2), Stephen Hwang escribió:
Mr. Maurel,

No apologies needed. Thank you for keeping us updated. 

On Tuesday, June 2, 2015 at 5:37:54 AM UTC-4, Thomas Maurel wrote:
Dear Stephen,

Just to let you know that most of our archives including feb2014 are now back online.

Regards,
Thomas
On 2 Jun 2015, at 09:22, Thomas Maurel <[hidden email]> wrote:

Dear Stephen,

I am afraid we experienced a power failure affecting many of our servers yesterday and some of our archive websites are still down at the moment.
We are looking into this and I will email as soon as the archive is back online.

Apologies for any inconvenienced caused.
Regards,
Thomas
On 1 Jun 2015, at 22:45, Stephen Hwang <[hidden email]> wrote:

Trying to use biomaRt and I get the following error: 

> ensembl=useMart(host='<a href="http://feb2014.archive.ensembl.org/" rel="nofollow" target="_blank" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Ffeb2014.archive.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNFlIg-WinEM851GBuRhvWAsqvSyiw&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Ffeb2014.archive.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNFlIg-WinEM851GBuRhvWAsqvSyiw&#39;;return true;">feb2014.archive.ensembl.org', biomart='ENSEMBL_MART_ENSEMBL', dataset="hsapiens_gene_ensembl")
Extra content at the end of the document
Error: 1: Extra content at the end of the document

Is this indicative that a new archive is to be used or is it just temporarily unavailable?

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--
Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom


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European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
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United Kingdom

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Re: [biomart-users] Biomart error: "Extra content at end of document"

Thomas Maurel
Dear Manuel,

I am afraid that the ensembl website and all the archives are down at the moment. 
You can find more informations on the following post: http://www.ensembl.info/blog/2016/08/19/ensembl-website-maintenance-aug-27th/

Apologies for any inconvenience caused.
Regards,
Thomas
On 23 Aug 2016, at 16:36, Manuel J Gomez <[hidden email]> wrote:

Hi,

I am getting the same error message now:

    Connect To BioMart at aug2014.archive.ensembl.org
    Extra content at the end of the document
    Error: 1: Extra content at the end of the document

Could it happen that some some archive websites are currently down?

Best regards,


El martes, 2 de junio de 2015, 16:14:17 (UTC+2), Stephen Hwang escribió:
Mr. Maurel,

No apologies needed. Thank you for keeping us updated. 

On Tuesday, June 2, 2015 at 5:37:54 AM UTC-4, Thomas Maurel wrote:
Dear Stephen,

Just to let you know that most of our archives including feb2014 are now back online.

Regards,
Thomas
On 2 Jun 2015, at 09:22, Thomas Maurel <[hidden email]> wrote:

Dear Stephen,

I am afraid we experienced a power failure affecting many of our servers yesterday and some of our archive websites are still down at the moment.
We are looking into this and I will email as soon as the archive is back online.

Apologies for any inconvenienced caused.
Regards,
Thomas
On 1 Jun 2015, at 22:45, Stephen Hwang <[hidden email]> wrote:

Trying to use biomaRt and I get the following error: 

> ensembl=useMart(host='<a href="http://feb2014.archive.ensembl.org/" rel="nofollow" target="_blank" onmousedown="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Ffeb2014.archive.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNFlIg-WinEM851GBuRhvWAsqvSyiw';return true;" onclick="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Ffeb2014.archive.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNFlIg-WinEM851GBuRhvWAsqvSyiw';return true;" class="">feb2014.archive.ensembl.org', biomart='ENSEMBL_MART_ENSEMBL', dataset="hsapiens_gene_ensembl")
Extra content at the end of the document
Error: 1: Extra content at the end of the document

Is this indicative that a new archive is to be used or is it just temporarily unavailable?

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--
Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom


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--
Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom


--
Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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Re: [biomart-users] Biomart error: "Extra content at end of document"

Franco Caramia-2
Hi Thomas, 

That link is not working for me. 

Is ensembl still down for maintenance? I havent been able to use for a couple of days now. 

Thanks, 

Franco 

On Wednesday, 24 August 2016 01:39:13 UTC+10, Thomas Maurel wrote:
Dear Manuel,

I am afraid that the ensembl website and all the archives are down at the moment. 
You can find more informations on the following post: <a href="http://www.ensembl.info/blog/2016/08/19/ensembl-website-maintenance-aug-27th/" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.info%2Fblog%2F2016%2F08%2F19%2Fensembl-website-maintenance-aug-27th%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHBJNMm0ULQC3m9aqyGJ4Diq6XVBw&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.info%2Fblog%2F2016%2F08%2F19%2Fensembl-website-maintenance-aug-27th%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHBJNMm0ULQC3m9aqyGJ4Diq6XVBw&#39;;return true;">http://www.ensembl.info/blog/2016/08/19/ensembl-website-maintenance-aug-27th/

Apologies for any inconvenience caused.
Regards,
Thomas
On 23 Aug 2016, at 16:36, Manuel J Gomez <<a href="javascript:" target="_blank" gdf-obfuscated-mailto="WbwZ2i-bDwAJ" rel="nofollow" onmousedown="this.href=&#39;javascript:&#39;;return true;" onclick="this.href=&#39;javascript:&#39;;return true;">mjg...@...> wrote:

Hi,

I am getting the same error message now:

    Connect To BioMart at <a href="http://aug2014.archive.ensembl.org" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Faug2014.archive.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNFIpqdoMgz_QDffjsB_eyJkHW-Ogg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Faug2014.archive.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNFIpqdoMgz_QDffjsB_eyJkHW-Ogg&#39;;return true;">aug2014.archive.ensembl.org
    Extra content at the end of the document
    Error: 1: Extra content at the end of the document

Could it happen that some some archive websites are currently down?

Best regards,


El martes, 2 de junio de 2015, 16:14:17 (UTC+2), Stephen Hwang escribió:
Mr. Maurel,

No apologies needed. Thank you for keeping us updated. 

On Tuesday, June 2, 2015 at 5:37:54 AM UTC-4, Thomas Maurel wrote:
Dear Stephen,

Just to let you know that most of our archives including feb2014 are now back online.

Regards,
Thomas
On 2 Jun 2015, at 09:22, Thomas Maurel <[hidden email]> wrote:

Dear Stephen,

I am afraid we experienced a power failure affecting many of our servers yesterday and some of our archive websites are still down at the moment.
We are looking into this and I will email as soon as the archive is back online.

Apologies for any inconvenienced caused.
Regards,
Thomas
On 1 Jun 2015, at 22:45, Stephen Hwang <[hidden email]> wrote:

Trying to use biomaRt and I get the following error: 

> ensembl=useMart(host='<a href="http://feb2014.archive.ensembl.org/" rel="nofollow" target="_blank" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Ffeb2014.archive.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNFlIg-WinEM851GBuRhvWAsqvSyiw&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Ffeb2014.archive.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNFlIg-WinEM851GBuRhvWAsqvSyiw&#39;;return true;">feb2014.archive.ensembl.org', biomart='ENSEMBL_MART_ENSEMBL', dataset="hsapiens_gene_ensembl")
Extra content at the end of the document
Error: 1: Extra content at the end of the document

Is this indicative that a new archive is to be used or is it just temporarily unavailable?

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Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom


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European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom


--
Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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Re: [biomart-users] Biomart error: "Extra content at end of document"

Amonida Zadissa
Hi Franco,

The Ensembl site was down last week in preparation for the data centre
shut down happening this weekend, from today Friday 26 August until
Tuesday 30th. We're hoping to have the site up and all the tools up and
running by Tuesday afternoon, see below for details. Meanwhile please
consider using one of our mirror sites instead.

Sorry for the inconvenience.

Best regards,
Amonida

Blog post
**
http://www.ensembl.info/blog/2016/08/11/ensembl-datacentre-shut-down/


Mirror sites
**
uswest.ensembl.org
useast.ensembl.org
asia.ensembl.org

--
Amonida Zadissa
Ensembl Production
EMBL-EBI
Hinxton
England


On 26/08/2016 02:06, Franco Caramia wrote:

> Hi Thomas,
>
> That link is not working for me.
>
> Is ensembl still down for maintenance? I havent been able to use for a couple of
> days now.
>
> Thanks,
>
> Franco
>
> On Wednesday, 24 August 2016 01:39:13 UTC+10, Thomas Maurel wrote:
>
>     Dear Manuel,
>
>     I am afraid that the ensembl website and all the archives are down at the
>     moment.
>     You can find more informations on the following post:
>     http://www.ensembl.info/blog/2016/08/19/ensembl-website-maintenance-aug-27th/ <http://www.ensembl.info/blog/2016/08/19/ensembl-website-maintenance-aug-27th/>
>
>     Apologies for any inconvenience caused.
>     Regards,
>     Thomas
>>     On 23 Aug 2016, at 16:36, Manuel J Gomez <[hidden email] <javascript:>>
>>     wrote:
>>
>>     Hi,
>>
>>     I am getting the same error message now:
>>
>>         Connect To BioMart at aug2014.archive.ensembl.org
>>     <http://aug2014.archive.ensembl.org>
>>         Extra content at the end of the document
>>         Error: 1: Extra content at the end of the document
>>
>>     Could it happen that some some archive websites are currently down?
>>
>>     Best regards,
>>
>>
>>     El martes, 2 de junio de 2015, 16:14:17 (UTC+2), Stephen Hwang escribió:
>>
>>         Mr. Maurel,
>>
>>         No apologies needed. Thank you for keeping us updated.
>>
>>         On Tuesday, June 2, 2015 at 5:37:54 AM UTC-4, Thomas Maurel wrote:
>>
>>             Dear Stephen,
>>
>>             Just to let you know that most of our archives including feb2014
>>             are now back online.
>>
>>             Regards,
>>             Thomas
>>>             On 2 Jun 2015, at 09:22, Thomas Maurel <[hidden email]> wrote:
>>>
>>>             Dear Stephen,
>>>
>>>             I am afraid we experienced a power failure affecting many of our
>>>             servers yesterday and some of our archive websites are still down
>>>             at the moment.
>>>             We are looking into this and I will email as soon as the archive
>>>             is back online.
>>>
>>>             Apologies for any inconvenienced caused.
>>>             Regards,
>>>             Thomas
>>>>             On 1 Jun 2015, at 22:45, Stephen Hwang <[hidden email]> wrote:
>>>>
>>>>             Trying to use biomaRt and I get the following error:
>>>>
>>>>             > ensembl=useMart(host='feb2014.archive.ensembl.org
>>>>             <http://feb2014.archive.ensembl.org/>',
>>>>             biomart='ENSEMBL_MART_ENSEMBL', dataset="hsapiens_gene_ensembl")
>>>>             Extra content at the end of the document
>>>>             Error: 1: Extra content at the end of the document
>>>>
>>>>             Is this indicative that a new archive is to be used or is it
>>>>             just temporarily unavailable?
>>>>
>>>>             --
>>>>             You received this message because you are subscribed to the
>>>>             Google Groups "biomart-users" group.
>>>>             To unsubscribe from this group and stop receiving emails from
>>>>             it, send an email to [hidden email].
>>>>             Visit this group at http://groups.google.com/group/biomart-users
>>>>             <http://groups.google.com/group/biomart-users>.
>>>>             For more options, visit https://groups.google.com/d/optout
>>>>             <https://groups.google.com/d/optout>.
>>>
>>>             --
>>>             Thomas Maurel
>>>             Bioinformatician - Ensembl Production Team
>>>             European Bioinformatics Institute (EMBL-EBI)
>>>             European Molecular Biology Laboratory
>>>             Wellcome Trust Genome Campus
>>>             Hinxton
>>>             Cambridge CB10 1SD
>>>             United Kingdom
>>>
>>>
>>>             --
>>>             You received this message because you are subscribed to the
>>>             Google Groups "biomart-users" group.
>>>             To unsubscribe from this group and stop receiving emails from it,
>>>             send an email to [hidden email].
>>>             Visit this group at http://groups.google.com/group/biomart-users
>>>             <http://groups.google.com/group/biomart-users>.
>>>             For more options, visit https://groups.google.com/d/optout
>>>             <https://groups.google.com/d/optout>.
>>
>>             --
>>             Thomas Maurel
>>             Bioinformatician - Ensembl Production Team
>>             European Bioinformatics Institute (EMBL-EBI)
>>             European Molecular Biology Laboratory
>>             Wellcome Trust Genome Campus
>>             Hinxton
>>             Cambridge CB10 1SD
>>             United Kingdom
>>
>
>     --
>     Thomas Maurel
>     Bioinformatician - Ensembl Production Team
>     European Bioinformatics Institute (EMBL-EBI)
>     European Molecular Biology Laboratory
>     Wellcome Trust Genome Campus
>     Hinxton
>     Cambridge CB10 1SD
>     United Kingdom
>
> --
> You received this message because you are subscribed to the Google Groups
> "biomart-users" group.
> To unsubscribe from this group and stop receiving emails from it, send an email
> to [hidden email]
> <mailto:[hidden email]>.
> Visit this group at https://groups.google.com/group/biomart-users.
> For more options, visit https://groups.google.com/d/optout.
>

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