[biomart-users] Ensembl release 84 is out!

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[biomart-users] Ensembl release 84 is out!

Thomas Maurel

We are pleased to announce that the new Ensembl marts for release 84 are now live on www.ensembl.org.

If you are using biomaRt, you can change your host to access our most recent data:

ensembl_mart_84 <- useEnsembl(biomart=“ensembl")

  • Ensembl Genes 84
    • Renamed "phase" attribute to "start phase" in the structure and sequence sections
    • Renamed homolog, paralog and ortholog to homologue, paralogue and orthologue
    • Renamed many attributes in the homologues section
    • Added new "associated gene name" attribute for orthologues and paralogues in the homologues section
  • Ensembl Variation 84
    • Retirement of the "population genetics" data
  • Ensembl Regulation 84
    • Retirement of the "regulatory segments" dataset for human
    • Renamed "Has evidence" attribute to "Activity" in the "Regulatory feature" dataset
  • Vega 64

A complete list of the changes in release 84 can be found at http://www.ensembl.org/info/website/news.html

Best Regards,
Thomas
--
Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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