[biomart-users] Error in Wormbase_parasite

classic Classic list List threaded Threaded
2 messages Options
Reply | Threaded
Open this post in threaded view
|

[biomart-users] Error in Wormbase_parasite

ankit arora
Hello,

I am using Biomart in respect to Wormbase, but I can't access through with below command as mentioned on the biomart website.

  library(biomaRt)
    mart <- useMart("parasite_mart", dataset = "wbps_eg_gene", host = "parasite.wormbase.org")

Error in useDataset(mart = mart, dataset = dataset, verbose = verbose) : 

  The given dataset:  wbps_eg_gene , is not valid.  Correct dataset names can be obtained with the listDatasets function.


Thanks a lot.








--
You received this message because you are subscribed to the Google Groups "biomart-users" group.
To unsubscribe from this group and stop receiving emails from it, send an email to [hidden email].
Visit this group at https://groups.google.com/group/biomart-users.
For more options, visit https://groups.google.com/d/optout.
Reply | Threaded
Open this post in threaded view
|

[biomart-users] Re: Error in Wormbase_parasite

Bruce Bolt
Dear Ankit

We updated the dataset name to ‘wbps_gene’ from ‘wbps_eg_gene’ in the last release.

I will change the online documentation.

Best regards

Bruce




-----
Bruce Bolt
Software Engineer, Non-vertebrate Genomics

European Bioinformatics Institute (EMBL-EBI)
Wellcome Genome Campus
Hinxton
Cambridge
CB10 1SD


On Tuesday, 17 January 2017 17:36:40 UTC, ankit arora wrote:
Hello,

I am using Biomart in respect to Wormbase, but I can't access through with below command as mentioned on the biomart website.

  library(biomaRt)
    mart <- useMart("parasite_mart", dataset = "wbps_eg_gene", host = "<a href="http://parasite.wormbase.org" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fparasite.wormbase.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNFWrY1FDsS3jgLGU5hjAvr-Z4iCzw&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fparasite.wormbase.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNFWrY1FDsS3jgLGU5hjAvr-Z4iCzw&#39;;return true;">parasite.wormbase.org")

Error in useDataset(mart = mart, dataset = dataset, verbose = verbose) : 

  The given dataset:  wbps_eg_gene , is not valid.  Correct dataset names can be obtained with the listDatasets function.


Thanks a lot.








--
You received this message because you are subscribed to the Google Groups "biomart-users" group.
To unsubscribe from this group and stop receiving emails from it, send an email to [hidden email].
Visit this group at https://groups.google.com/group/biomart-users.
For more options, visit https://groups.google.com/d/optout.