[biomart-users] Error when using getBM()

classic Classic list List threaded Threaded
1 message Options
Reply | Threaded
Open this post in threaded view

[biomart-users] Error when using getBM()

Hi, I am using an R script using the biomart package, which I have been using without any problem for a long time. Today it has stopped working and I am getting this error:

ensembl = useMart("ensembl",dataset="hsapiens_gene_ensembl")

gene_entrez_ids <- as.vector(miRTarBase$Target.Gene..Entrez.Gene.ID.)
annotation <- getBM(attributes = c('ensembl_gene_id', 'entrezgene'),
                        filters = 'entrezgene',
                        values = gene_entrez_ids,
                        mart = ensembl)

Error in getBM(attributes = c("ensembl_gene_id", "entrezgene"), filters = "entrezgene",  : 
  The query to the BioMart webservice returned an invalid result: the number of columns in the result table does not equal the number of attributes in the query. Please report this to the mailing list.

Is the server down?

Thank you,


You received this message because you are subscribed to the Google Groups "biomart-users" group.
To unsubscribe from this group and stop receiving emails from it, send an email to [hidden email].
Visit this group at https://groups.google.com/group/biomart-users.
For more options, visit https://groups.google.com/d/optout.