[biomart-users] Problem with accessing biomaRt

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[biomart-users] Problem with accessing biomaRt

Edin Hamzic
I am getting the following error when I try to make a query using getBM() function from biomaRt. The code has been working just fine until yesterday.

> variation <- useMart(biomart = "ENSEMBL_MART_SNP", dataset="hsapiens_snp")
Request to BioMart web service failed.
The BioMart web service you're accessing may be down.
Check the following URL and see if this website is available:
http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
Error in if (!grepl(x = registry, pattern = "^\n*<MartRegistry>")) { : 
  argument is of length zero

When I try the suggested URL I get the following output:

<MartRegistry>
  <MartURLLocation database="ensembl_mart_90" default="1" displayName="Ensembl Genes 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ENSEMBL" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="mouse_mart_90" default="" displayName="Mouse strains 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_MOUSE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="sequence_mart_90" default="" displayName="Sequence" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SEQUENCE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="ontology_mart_90" default="" displayName="Ontology" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ONTOLOGY" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="genomic_features_mart_90" default="" displayName="Genomic features 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_GENOMIC" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="snp_mart_90" default="" displayName="Ensembl Variation 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SNP" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="regulation_mart_90" default="" displayName="Ensembl Regulation 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_FUNCGEN" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
</MartRegistry>

Any suggestions?

Thanks


EdinH.

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Re: [biomart-users] Problem with accessing biomaRt

Thomas Maurel
Dear Edith,

I am afraid that we had an issue with our marts but it should be resolved now.

Could you please try again?
Kind Regards,
Thomas
On 12 Oct 2017, at 22:34, Edin Hamzic <[hidden email]> wrote:

I am getting the following error when I try to make a query using getBM() function from biomaRt. The code has been working just fine until yesterday.

> variation <- useMart(biomart = "ENSEMBL_MART_SNP", dataset="hsapiens_snp")
Request to BioMart web service failed.
The BioMart web service you're accessing may be down.
Check the following URL and see if this website is available:
http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
Error in if (!grepl(x = registry, pattern = "^\n*<MartRegistry>")) { : 
  argument is of length zero

When I try the suggested URL I get the following output:

<MartRegistry>
  <MartURLLocation database="ensembl_mart_90" default="1" displayName="Ensembl Genes 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ENSEMBL" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="mouse_mart_90" default="" displayName="Mouse strains 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_MOUSE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="sequence_mart_90" default="" displayName="Sequence" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SEQUENCE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="ontology_mart_90" default="" displayName="Ontology" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ONTOLOGY" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="genomic_features_mart_90" default="" displayName="Genomic features 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_GENOMIC" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="snp_mart_90" default="" displayName="Ensembl Variation 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SNP" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="regulation_mart_90" default="" displayName="Ensembl Regulation 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_FUNCGEN" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
</MartRegistry>

Any suggestions?

Thanks


EdinH.

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Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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Re: [biomart-users] Problem with accessing biomaRt

Thomas Maurel
Sorry for the typo in your name Edin.

Kind Regards,
Thomas
On 16 Oct 2017, at 11:54, Thomas Maurel <[hidden email]> wrote:

Dear Edith,

I am afraid that we had an issue with our marts but it should be resolved now.

Could you please try again?
Kind Regards,
Thomas
On 12 Oct 2017, at 22:34, Edin Hamzic <[hidden email]> wrote:

I am getting the following error when I try to make a query using getBM() function from biomaRt. The code has been working just fine until yesterday.

> variation <- useMart(biomart = "ENSEMBL_MART_SNP", dataset="hsapiens_snp")
Request to BioMart web service failed.
The BioMart web service you're accessing may be down.
Check the following URL and see if this website is available:
http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
Error in if (!grepl(x = registry, pattern = "^\n*<MartRegistry>")) { : 
  argument is of length zero

When I try the suggested URL I get the following output:

<MartRegistry>
  <MartURLLocation database="ensembl_mart_90" default="1" displayName="Ensembl Genes 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ENSEMBL" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="mouse_mart_90" default="" displayName="Mouse strains 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_MOUSE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="sequence_mart_90" default="" displayName="Sequence" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SEQUENCE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="ontology_mart_90" default="" displayName="Ontology" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ONTOLOGY" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="genomic_features_mart_90" default="" displayName="Genomic features 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_GENOMIC" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="snp_mart_90" default="" displayName="Ensembl Variation 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SNP" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="regulation_mart_90" default="" displayName="Ensembl Regulation 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_FUNCGEN" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
</MartRegistry>

Any suggestions?

Thanks


EdinH.

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Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom


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Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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Re: [biomart-users] Problem with accessing biomaRt

Karsten Sieber
@Thomas,

I had reported this same problem in biostars (https://www.biostars.org/p/278091/#278218), and after your post my snpmart is now working again.

Thank you,
Karsten 

On Monday, October 16, 2017 at 6:55:19 AM UTC-4, Thomas Maurel wrote:
Sorry for the typo in your name Edin.

Kind Regards,
Thomas
On 16 Oct 2017, at 11:54, Thomas Maurel <<a href="javascript:" target="_blank" gdf-obfuscated-mailto="3qAGNRbXAQAJ" rel="nofollow" onmousedown="this.href=&#39;javascript:&#39;;return true;" onclick="this.href=&#39;javascript:&#39;;return true;">mau...@...> wrote:

Dear Edith,

I am afraid that we had an issue with our marts but it should be resolved now.

Could you please try again?
Kind Regards,
Thomas
On 12 Oct 2017, at 22:34, Edin Hamzic <<a href="javascript:" target="_blank" gdf-obfuscated-mailto="3qAGNRbXAQAJ" rel="nofollow" onmousedown="this.href=&#39;javascript:&#39;;return true;" onclick="this.href=&#39;javascript:&#39;;return true;">edin....@...> wrote:

I am getting the following error when I try to make a query using getBM() function from biomaRt. The code has been working just fine until yesterday.

> variation <- useMart(biomart = "ENSEMBL_MART_SNP", dataset="hsapiens_snp")
Request to BioMart web service failed.
The BioMart web service you're accessing may be down.
Check the following URL and see if this website is available:
<a href="http://www.ensembl.org/biomart/martservice?type=registry&amp;requestid=biomaRt" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2Fbiomart%2Fmartservice%3Ftype%3Dregistry%26requestid%3DbiomaRt\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNGF8TlTql4xiT6yYHEDSdquURhVIA&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2Fbiomart%2Fmartservice%3Ftype%3Dregistry%26requestid%3DbiomaRt\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNGF8TlTql4xiT6yYHEDSdquURhVIA&#39;;return true;">http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
Error in if (!grepl(x = registry, pattern = "^\n*<MartRegistry>")) { : 
  argument is of length zero

When I try the suggested URL I get the following output:

<MartRegistry>
  <MartURLLocation database="ensembl_mart_90" default="1" displayName="Ensembl Genes 90" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ENSEMBL" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="mouse_mart_90" default="" displayName="Mouse strains 90" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_MOUSE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="sequence_mart_90" default="" displayName="Sequence" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SEQUENCE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="ontology_mart_90" default="" displayName="Ontology" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ONTOLOGY" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="genomic_features_mart_90" default="" displayName="Genomic features 90" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_GENOMIC" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="snp_mart_90" default="" displayName="Ensembl Variation 90" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SNP" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="regulation_mart_90" default="" displayName="Ensembl Regulation 90" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%2F\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNHdJB_j0bsdwZCIvs4BzVq9c-74hg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_FUNCGEN" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
</MartRegistry>

Any suggestions?

Thanks


EdinH.

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Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom


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Thomas Maurel
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European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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Re: [biomart-users] Problem with accessing biomaRt

Edin Hamzic
In reply to this post by Thomas Maurel
Thanks Thomas! Now getBM function works fine and no problem about the name. 

Kind regards,

EdinH.

On Mon, Oct 16, 2017 at 12:55 PM, Thomas Maurel <[hidden email]> wrote:
Sorry for the typo in your name Edin.

Kind Regards,
Thomas

On 16 Oct 2017, at 11:54, Thomas Maurel <[hidden email]> wrote:

Dear Edith,

I am afraid that we had an issue with our marts but it should be resolved now.

Could you please try again?
Kind Regards,
Thomas
On 12 Oct 2017, at 22:34, Edin Hamzic <[hidden email]> wrote:

I am getting the following error when I try to make a query using getBM() function from biomaRt. The code has been working just fine until yesterday.

> variation <- useMart(biomart = "ENSEMBL_MART_SNP", dataset="hsapiens_snp")
Request to BioMart web service failed.
The BioMart web service you're accessing may be down.
Check the following URL and see if this website is available:
http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
Error in if (!grepl(x = registry, pattern = "^\n*<MartRegistry>")) { : 
  argument is of length zero

When I try the suggested URL I get the following output:

<MartRegistry>
  <MartURLLocation database="ensembl_mart_90" default="1" displayName="Ensembl Genes 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ENSEMBL" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="mouse_mart_90" default="" displayName="Mouse strains 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_MOUSE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="sequence_mart_90" default="" displayName="Sequence" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SEQUENCE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="ontology_mart_90" default="" displayName="Ontology" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ONTOLOGY" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="genomic_features_mart_90" default="" displayName="Genomic features 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_GENOMIC" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
  <MartURLLocation database="snp_mart_90" default="" displayName="Ensembl Variation 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SNP" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
  <MartURLLocation database="regulation_mart_90" default="" displayName="Ensembl Regulation 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_FUNCGEN" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
</MartRegistry>

Any suggestions?

Thanks


EdinH.

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Hinxton
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Wellcome Trust Genome Campus
Hinxton
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Re: [biomart-users] Problem with accessing biomaRt

Alex Gutteridge
I am having the same (or similar?) issue:

R version 3.4.1 (2017-06-30) -- "Single Candle"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)


R
is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.


R
is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.


Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.


> library(biomaRt)
>
> ensembl = useMart("ensembl", dataset = "hsapiens_gene_ensembl")
Request to BioMart web service failed.
The BioMart web service you're accessing may be down.
Check the following URL and see if this website is available:
http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
Error in if (!grepl(x = registry, pattern = "^\n*<MartRegistry>")) { :
  argument is of length zero


When I check the URL in browser it seems OK:

 <MartRegistry>
 
<MartURLLocation database="ensembl_mart_90" default="1" displayName="Ensembl Genes 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ENSEMBL" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
 
<MartURLLocation database="mouse_mart_90" default="" displayName="Mouse strains 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_MOUSE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
 
<MartURLLocation database="sequence_mart_90" default="" displayName="Sequence" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SEQUENCE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
 
<MartURLLocation database="ontology_mart_90" default="" displayName="Ontology" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ONTOLOGY" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
 
<MartURLLocation database="genomic_features_mart_90" default="" displayName="Genomic features 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_GENOMIC" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
 
<MartURLLocation database="snp_mart_90" default="" displayName="Ensembl Variation 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SNP" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
 
<MartURLLocation database="regulation_mart_90" default="" displayName="Ensembl Regulation 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_FUNCGEN" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
</MartRegistry>


Have updated packages.

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Re: [biomart-users] Problem with accessing biomaRt

Thomas Maurel
Dear Alex, 

I believe something similar happened. BioMart is working fine for me since this morning.

Do you still experience the same issue?
Kind Regards,
Thomas
On 18 Oct 2017, at 09:31, Alex Gutteridge <[hidden email]> wrote:

I am having the same (or similar?) issue:

R version 3.4.1 (2017-06-30) -- "Single Candle"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)


R
is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.


R
is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.


Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.


> library(biomaRt)
>
> ensembl = useMart("ensembl", dataset = "hsapiens_gene_ensembl")
Request to BioMart web service failed.
The BioMart web service you're accessing may be down.
Check the following URL and see if this website is available:
http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
Error in if (!grepl(x = registry, pattern = "^\n*<MartRegistry>")) { :
  argument is of length zero


When I check the URL in browser it seems OK:

 <MartRegistry>
 
<MartURLLocation database="ensembl_mart_90" default="1" displayName="Ensembl Genes 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ENSEMBL" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
 
<MartURLLocation database="mouse_mart_90" default="" displayName="Mouse strains 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_MOUSE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
 
<MartURLLocation database="sequence_mart_90" default="" displayName="Sequence" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SEQUENCE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
 
<MartURLLocation database="ontology_mart_90" default="" displayName="Ontology" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ONTOLOGY" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
 
<MartURLLocation database="genomic_features_mart_90" default="" displayName="Genomic features 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_GENOMIC" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
 
<MartURLLocation database="snp_mart_90" default="" displayName="Ensembl Variation 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SNP" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
 
<MartURLLocation database="regulation_mart_90" default="" displayName="Ensembl Regulation 90" host="www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_FUNCGEN" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
</MartRegistry>


Have updated packages.

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European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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Re: [biomart-users] Problem with accessing biomaRt

Alex Gutteridge
Ah this is strange (and perhaps not a biomaRt issue after all). From my office in the EBI it still doesn't work (???), but if I go behind my companies VPN it does... Proxy issue or something at EBI?!

On Wednesday, 18 October 2017 12:42:50 UTC+1, Thomas Maurel wrote:
Dear Alex, 

I believe something similar happened. BioMart is working fine for me since this morning.

Do you still experience the same issue?
Kind Regards,
Thomas
On 18 Oct 2017, at 09:31, Alex Gutteridge <<a href="javascript:" target="_blank" gdf-obfuscated-mailto="RUiTfumyAAAJ" rel="nofollow" onmousedown="this.href=&#39;javascript:&#39;;return true;" onclick="this.href=&#39;javascript:&#39;;return true;">alexgut...@...> wrote:

I am having the same (or similar?) issue:

R version 3.4.1 (2017-06-30) -- "Single Candle"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)


R
is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.


R
is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.


Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.


> library(biomaRt)
>
> ensembl = useMart("ensembl", dataset = "hsapiens_gene_ensembl")
Request to BioMart web service failed.
The BioMart web service you're accessing may be down.
Check the following URL and see if this website is available:
<a href="http://www.ensembl.org:80/biomart/martservice?type=registry&amp;requestid=biomaRt" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%3A80%2Fbiomart%2Fmartservice%3Ftype%3Dregistry%26requestid%3DbiomaRt\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNG2qP9r3pP3MS4nosxww7R9o_sbKg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%3A80%2Fbiomart%2Fmartservice%3Ftype%3Dregistry%26requestid%3DbiomaRt\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNG2qP9r3pP3MS4nosxww7R9o_sbKg&#39;;return true;">http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
Error in if (!grepl(x = registry, pattern = "^\n*<MartRegistry>")) { :
  argument is of length zero


When I check the URL in browser it seems OK:

 <MartRegistry>
 
<MartURLLocation database="ensembl_mart_90" default="1" displayName="Ensembl Genes 90" host="<a href="http://www.ensembl.org" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ENSEMBL" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
 
<MartURLLocation database="mouse_mart_90" default="" displayName="Mouse strains 90" host="<a href="http://www.ensembl.org" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_MOUSE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
 
<MartURLLocation database="sequence_mart_90" default="" displayName="Sequence" host="<a href="http://www.ensembl.org" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SEQUENCE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
 
<MartURLLocation database="ontology_mart_90" default="" displayName="Ontology" host="<a href="http://www.ensembl.org" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ONTOLOGY" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
 
<MartURLLocation database="genomic_features_mart_90" default="" displayName="Genomic features 90" host="<a href="http://www.ensembl.org" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_GENOMIC" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
 
<MartURLLocation database="snp_mart_90" default="" displayName="Ensembl Variation 90" host="<a href="http://www.ensembl.org" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SNP" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
 
<MartURLLocation database="regulation_mart_90" default="" displayName="Ensembl Regulation 90" host="<a href="http://www.ensembl.org" target="_blank" rel="nofollow" onmousedown="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;" onclick="this.href=&#39;http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg&#39;;return true;">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_FUNCGEN" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
</MartRegistry>


Have updated packages.

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Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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Re: [biomart-users] Problem with accessing biomaRt

Thomas Maurel
Dear Alex,

It should work fine without proxy on the EBI network (that’s where I am ;-) ), you can still setup a proxy variable in R: 
#Sys.putenv("http\_proxy" = "http://my.proxy.org:9999")
#or
#options(RCurlOptions = list(proxy=“uscache.kcc.com:80",proxyuserpwd="------:-------")


Hope this helps,
Kind Regards,
Thomas
On 18 Oct 2017, at 12:49, Alex Gutteridge <[hidden email]> wrote:

Ah this is strange (and perhaps not a biomaRt issue after all). From my office in the EBI it still doesn't work (???), but if I go behind my companies VPN it does... Proxy issue or something at EBI?!

On Wednesday, 18 October 2017 12:42:50 UTC+1, Thomas Maurel wrote:
Dear Alex, 

I believe something similar happened. BioMart is working fine for me since this morning.

Do you still experience the same issue?
Kind Regards,
Thomas
On 18 Oct 2017, at 09:31, Alex Gutteridge <<a href="javascript:" target="_blank" gdf-obfuscated-mailto="RUiTfumyAAAJ" rel="nofollow" onmousedown="this.href='javascript:';return true;" onclick="this.href='javascript:';return true;" class="">alexgut...@...> wrote:

I am having the same (or similar?) issue:

R version 3.4.1 (2017-06-30) -- "Single Candle"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)


R
is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.


R
is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.


Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.


> library(biomaRt)
>
> ensembl = useMart("ensembl", dataset = "hsapiens_gene_ensembl")
Request to BioMart web service failed.
The BioMart web service you're accessing may be down.
Check the following URL and see if this website is available:
<a href="http://www.ensembl.org/biomart/martservice?type=registry&amp;requestid=biomaRt" target="_blank" rel="nofollow" onmousedown="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%3A80%2Fbiomart%2Fmartservice%3Ftype%3Dregistry%26requestid%3DbiomaRt\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNG2qP9r3pP3MS4nosxww7R9o_sbKg';return true;" onclick="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org%3A80%2Fbiomart%2Fmartservice%3Ftype%3Dregistry%26requestid%3DbiomaRt\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNG2qP9r3pP3MS4nosxww7R9o_sbKg';return true;" class="">http://www.ensembl.org:80/biomart/martservice?type=registry&requestid=biomaRt
Error in if (!grepl(x = registry, pattern = "^\n*<MartRegistry>")) { :
  argument is of length zero


When I check the URL in browser it seems OK:

 <MartRegistry>
 
<MartURLLocation database="ensembl_mart_90" default="1" displayName="Ensembl Genes 90" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" onclick="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" class="">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ENSEMBL" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
 
<MartURLLocation database="mouse_mart_90" default="" displayName="Mouse strains 90" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" onclick="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" class="">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_MOUSE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
 
<MartURLLocation database="sequence_mart_90" default="" displayName="Sequence" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" onclick="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" class="">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SEQUENCE" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
 
<MartURLLocation database="ontology_mart_90" default="" displayName="Ontology" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" onclick="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" class="">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_ONTOLOGY" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
 
<MartURLLocation database="genomic_features_mart_90" default="" displayName="Genomic features 90" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" onclick="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" class="">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_GENOMIC" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="" />
 
<MartURLLocation database="snp_mart_90" default="" displayName="Ensembl Variation 90" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" onclick="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" class="">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_SNP" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
 
<MartURLLocation database="regulation_mart_90" default="" displayName="Ensembl Regulation 90" host="<a href="http://www.ensembl.org/" target="_blank" rel="nofollow" onmousedown="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" onclick="this.href='http://www.google.com/url?q\x3dhttp%3A%2F%2Fwww.ensembl.org\x26sa\x3dD\x26sntz\x3d1\x26usg\x3dAFQjCNEhRkMjGzJ0Ux5vBUiT-NWHb0ycIg';return true;" class="">www.ensembl.org" includeDatasets="" martUser="" name="ENSEMBL_MART_FUNCGEN" path="/biomart/martservice" port="80" serverVirtualSchema="default" visible="1" />
</MartRegistry>


Have updated packages.

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Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom


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Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
United Kingdom

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