[diyg-dev-l] ISGA GMOD Membership Nomination

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[diyg-dev-l] ISGA GMOD Membership Nomination

Dave Clements, GMOD Help Desk-3
Hello all,

I would like to nominate ISGA for membership in GMOD.  ISGA is a bioinformatics pipeline service based on the Ergatis workflow system. ISGA comes with prokaryotic annotation and assembly pipelines and offers an intuitive interface for biologists to run and customize pipelines. ISGA also integrates tools such as GBrowse and BLAST for visualizing and analyzing pipeline results. Since ISGA utilizes Ergatis, ISGA pipelines can be submitted back to the Ergatis community and Ergatis pipelines can be adapted to use ISGA.

ISGA (pronounced "I-S-G-A") was created at Indiana University's Center for Genomics and Bioinformatics (CGB) by Chris Hemmerich, Aaron Buechlein, Ram Podicheti, Kashi Revanna, and Qunfeng Dong. CGB also hosts a public installation of ISGA (see Links below).

I believe that ISGA meets all of GMOD's membership requirements (see http://gmod.org/wiki/GMOD_Membership#Requirements).  The CGB is willing to support ISGA for at least 2 years.

ISGA could be useful to anyone working with complex pipelines and is directly applicable to existing and potential Ergatis users.  This nomination is going to the Ergatis and DIYA lists, and to the developers of other GMOD components related to computational pipelines.  If you have any feedback or comments on ISGA becoming a part of GMOD, please respond on list or send mail directly to the help desk, by the end of August 6.

Thanks,

Dave C

ISGA Home Page, Tutorials, and FAQ
  http://isga.cgb.indiana.edu/ 
  http://isga.cgb.indiana.edu/Help/Tutorial
  http://isga.cgb.indiana.edu/Help/FAQ
Paper
  http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/8/1122
Posters/Presentations
  http://gmod.org/wiki/Image:NGSTranscriptomeISGAErgatis.pdf
  http://gmod.org/wiki/Image:ISGAISMB2010Poster.pdf
  http://gmod.org/wiki/Image:Jan2010ErgatisForBiologists.pdf
Ergatis
  http://gmod.org/wiki/Ergatis
  http://ergatis.sourceforge.net/
GMOD Membership Requirements
  http://gmod.org/wiki/GMOD_Membership#Requirements


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Re: [diyg-dev-l] [Diyg-pub-l] ISGA GMOD Membership Nomination

Dave Clements
Hello all,

This is just a reminder to send any comments on ISGA in the next three days.

Thanks,

Dave C

On Thu, Jul 29, 2010 at 11:07 AM, Dave Clements, GMOD Help Desk <[hidden email]> wrote:
Hello all,

I would like to nominate ISGA for membership in GMOD.  ISGA is a bioinformatics pipeline service based on the Ergatis workflow system. ISGA comes with prokaryotic annotation and assembly pipelines and offers an intuitive interface for biologists to run and customize pipelines. ISGA also integrates tools such as GBrowse and BLAST for visualizing and analyzing pipeline results. Since ISGA utilizes Ergatis, ISGA pipelines can be submitted back to the Ergatis community and Ergatis pipelines can be adapted to use ISGA.

ISGA (pronounced "I-S-G-A") was created at Indiana University's Center for Genomics and Bioinformatics (CGB) by Chris Hemmerich, Aaron Buechlein, Ram Podicheti, Kashi Revanna, and Qunfeng Dong. CGB also hosts a public installation of ISGA (see Links below).

I believe that ISGA meets all of GMOD's membership requirements (see http://gmod.org/wiki/GMOD_Membership#Requirements).  The CGB is willing to support ISGA for at least 2 years.

ISGA could be useful to anyone working with complex pipelines and is directly applicable to existing and potential Ergatis users.  This nomination is going to the Ergatis and DIYA lists, and to the developers of other GMOD components related to computational pipelines.  If you have any feedback or comments on ISGA becoming a part of GMOD, please respond on list or send mail directly to the help desk, by the end of August 6.

Thanks,

Dave C

ISGA Home Page, Tutorials, and FAQ
  http://isga.cgb.indiana.edu/ 
  http://isga.cgb.indiana.edu/Help/Tutorial
  http://isga.cgb.indiana.edu/Help/FAQ
Paper
  http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/8/1122
Posters/Presentations
  http://gmod.org/wiki/Image:NGSTranscriptomeISGAErgatis.pdf
  http://gmod.org/wiki/Image:ISGAISMB2010Poster.pdf
  http://gmod.org/wiki/Image:Jan2010ErgatisForBiologists.pdf
Ergatis
  http://gmod.org/wiki/Ergatis
  http://ergatis.sourceforge.net/
GMOD Membership Requirements
  http://gmod.org/wiki/GMOD_Membership#Requirements


--
===> PLEASE KEEP RESPONSES ON THE LIST <===
http://gmod.org/wiki/GMOD_News
http://gmod.org/wiki/GMOD_Europe_2010
http://gmod.org/wiki/Help_Desk_Feedback


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Plug-In Development Kit to bring their C/C++ apps to Palm for a share
of $1 Million in cash or HP Products. Visit us here for more details:
http://p.sf.net/sfu/dev2dev-palm

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The Palm PDK Hot Apps Program offers developers who use the
Plug-In Development Kit to bring their C/C++ apps to Palm for a share
of $1 Million in cash or HP Products. Visit us here for more details:
http://p.sf.net/sfu/dev2dev-palm
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