Hello all,
I would like to nominate ISGA for membership in GMOD.
ISGA is a bioinformatics pipeline service based on the Ergatis workflow
system.
ISGA comes with prokaryotic
annotation and assembly pipelines and offers an intuitive
interface for biologists to run and customize pipelines. ISGA also
integrates tools such as GBrowse and BLAST for visualizing and analyzing
pipeline results. Since ISGA utilizes Ergatis, ISGA pipelines can be submitted
back to the Ergatis community and Ergatis pipelines can be adapted
to use ISGA.
ISGA (pronounced "I-S-G-A") was created at Indiana
University's Center for Genomics and Bioinformatics (CGB) by Chris
Hemmerich, Aaron Buechlein, Ram Podicheti, Kashi Revanna, and Qunfeng
Dong. CGB also hosts a public installation of ISGA (see Links below).
I believe that
ISGA meets all of GMOD's membership requirements (see
http://gmod.org/wiki/GMOD_Membership#Requirements). The CGB is willing to support ISGA for at least 2 years.
ISGA could be useful to anyone
working with complex pipelines and is directly applicable to existing
and potential Ergatis users. This
nomination is going to the Ergatis and DIYA lists, and to
the developers of other GMOD components related to computational
pipelines. If you have any feedback or comments on
ISGA
becoming a part of GMOD, please respond on list or send mail directly
to the help desk, by the end of August 6.
Thanks,
Dave C
ISGA Home Page, Tutorials, and FAQ
http://isga.cgb.indiana.edu/
http://isga.cgb.indiana.edu/Help/Tutorial
http://isga.cgb.indiana.edu/Help/FAQ
Paper
http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/8/1122
Posters/Presentations
http://gmod.org/wiki/Image:NGSTranscriptomeISGAErgatis.pdf
http://gmod.org/wiki/Image:ISGAISMB2010Poster.pdf
http://gmod.org/wiki/Image:Jan2010ErgatisForBiologists.pdf
Ergatis
http://gmod.org/wiki/Ergatis http://ergatis.sourceforge.net/
GMOD Membership Requirements
http://gmod.org/wiki/GMOD_Membership#Requirements
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