dump annotations by an author via script?

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dump annotations by an author via script?

Sofia Robb
Hi,

is there a programmatically way to dump gff of annotations by an author? 

Thanks,
Sofia





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Re: dump annotations by an author via script?

nathandunn

Sofia,

You could hack IOServiceController to write this (around link 99) or you can filter the GFF3 ids by owner to do the same thing since those tend to be stored on the gene and mRNA:

##gff-version 3
##sequence-region chrI 1 230208
chrI . gene 135856 136635 . + . owner=[hidden email];ID=cba91764-afd5-441e-81e6-dd73e193706f;date_last_modified=2017-03-24;Name=YAL009W;date_creation=2017-03-24
chrI . mRNA 135856 136635 . + . owner=[hidden email];Parent=cba91764-afd5-441e-81e6-dd73e193706f;ID=53d78b3f-6994-44a0-aa87-61870f3c3455;date_last_modified=2017-03-24;Name=YAL009W-00001;date_creation=2017-03-24
chrI . exon 135856 136635 . + . Parent=53d78b3f-6994-44a0-aa87-61870f3c3455;ID=9e2fa55c-58fd-4e57-95e6-2882894c4317;Name=9e2fa55c-58fd-4e57-95e6-2882894c4317
chrI . CDS 135856 136635 . + 0 Parent=53d78b3f-6994-44a0-aa87-61870f3c3455;ID=53d78b3f-6994-44a0-aa87-61870f3c3455-CDS;Name=53d78b3f-6994-44a0-aa87-61870f3c3455-CDS
###

Nathan

> On Jun 27, 2017, at 6:53 PM, Sofia Robb <[hidden email]> wrote:
>
> Hi,
>
> is there a programmatically way to dump gff of annotations by an author?
>
> Thanks,
> Sofia
>
>
>
>
> This list is for the Apollo Annotation Editing Tool. Info at http://genomearchitect.org/
> If you wish to unsubscribe from the Apollo List: 1. From the address with which you subscribed to the list, send a message to [hidden email] | 2. In the subject line of your email type: unsubscribe apollo | 3. Leave the message body blank.
>




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