error in gbrowse2 logs

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error in gbrowse2 logs

Benjamin Hitz
[Mon Jan 10 10:50:55 2011] [error] [client ::1] Hexadecimal number > 0xffffffff non-portable at (eval 239) line 1., referer: http://localhost/cgi-bin/gbrowse/scgenome/

Anyone know what this is?  We suspect it's something to do with 32-bit libraries on a 64-bit machine (OSX 10.6).
It does not appear to be a fatal error at all...

Ben
--
Ben Hitz
Senior Scientific Programmer ** Saccharomyces Genome Database ** GO Consortium
Stanford University ** [hidden email]




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Re: error in gbrowse2 logs

Scott Cain
Hi Ben,

I agree with your initial diagnosis (or at least, google agrees :-)
The trick is figuring out where this comes from.  Frequently problems
in evals are coming from config file callbacks.  Can you try trimming
out your callbacks to see if this goes away to sort out if a callback
is doing it and if so, which one?

Scott


On Mon, Jan 10, 2011 at 6:11 PM, Benjamin Hitz <[hidden email]> wrote:

> [Mon Jan 10 10:50:55 2011] [error] [client ::1] Hexadecimal number > 0xffffffff non-portable at (eval 239) line 1., referer: http://localhost/cgi-bin/gbrowse/scgenome/
>
> Anyone know what this is?  We suspect it's something to do with 32-bit libraries on a 64-bit machine (OSX 10.6).
> It does not appear to be a fatal error at all...
>
> Ben
> --
> Ben Hitz
> Senior Scientific Programmer ** Saccharomyces Genome Database ** GO Consortium
> Stanford University ** [hidden email]
>
>
>
>
> ------------------------------------------------------------------------------
> Gaining the trust of online customers is vital for the success of any company
> that requires sensitive data to be transmitted over the Web.   Learn how to
> best implement a security strategy that keeps consumers' information secure
> and instills the confidence they need to proceed with transactions.
> http://p.sf.net/sfu/oracle-sfdevnl
> _______________________________________________
> Gmod-gbrowse mailing list
> [hidden email]
> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>



--
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

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Re: error in gbrowse2 logs

Benjamin Hitz
Scott -

It has been narrowed down to the following stanza in our conf:
[Landmarks:overview]
database        = scgenome
feature = region:landmark centromere:SGD
glyph = sub {
                my $f = shift;
                my $type = $f->type;
                return "dot" if ($type eq "centromere:SGD");
                return "span";
                }
height = 10
label = sub {
                my $f = shift;
                my $nm = $f->name;
                return $nm if $nm;
                my ($lid) = $f->attributes('load_id');
                return $lid;
                }
key = Landmarks



On Jan 11, 2011, at 11:42 AM, Scott Cain wrote:

> Hi Ben,
>
> I agree with your initial diagnosis (or at least, google agrees :-)
> The trick is figuring out where this comes from.  Frequently problems
> in evals are coming from config file callbacks.  Can you try trimming
> out your callbacks to see if this goes away to sort out if a callback
> is doing it and if so, which one?
>
> Scott
>
>
> On Mon, Jan 10, 2011 at 6:11 PM, Benjamin Hitz <[hidden email]> wrote:
>> [Mon Jan 10 10:50:55 2011] [error] [client ::1] Hexadecimal number > 0xffffffff non-portable at (eval 239) line 1., referer: http://localhost/cgi-bin/gbrowse/scgenome/
>>
>> Anyone know what this is?  We suspect it's something to do with 32-bit libraries on a 64-bit machine (OSX 10.6).
>> It does not appear to be a fatal error at all...
>>
>> Ben
>> --
>> Ben Hitz
>> Senior Scientific Programmer ** Saccharomyces Genome Database ** GO Consortium
>> Stanford University ** [hidden email]
>>
>>
>>
>>
>> ------------------------------------------------------------------------------
>> Gaining the trust of online customers is vital for the success of any company
>> that requires sensitive data to be transmitted over the Web.   Learn how to
>> best implement a security strategy that keeps consumers' information secure
>> and instills the confidence they need to proceed with transactions.
>> http://p.sf.net/sfu/oracle-sfdevnl
>> _______________________________________________
>> Gmod-gbrowse mailing list
>> [hidden email]
>> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>>
>
>
>
> --
> ------------------------------------------------------------------------
> Scott Cain, Ph. D.                                   scott at scottcain dot net
> GMOD Coordinator (http://gmod.org/)                     216-392-3087
> Ontario Institute for Cancer Research

--
Ben Hitz
Senior Scientific Programmer
Saccharomyces Genome Project
Stanford University
[hidden email]




------------------------------------------------------------------------------
Protect Your Site and Customers from Malware Attacks
Learn about various malware tactics and how to avoid them. Understand
malware threats, the impact they can have on your business, and how you
can protect your company and customers by using code signing.
http://p.sf.net/sfu/oracle-sfdevnl
_______________________________________________
Gmod-gbrowse mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse