gbrowse 2.08 trouble generating images

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gbrowse 2.08 trouble generating images

okeeffe
Hi,
I'm getting a blank region and details page when zooming out from a
selected gene region.
The initial gene displays fine but zooming in or out results in the png
below.
Error messages in the log file point to tmp image creation issues. The
directory contains lots of other png images - so no rights issue.
Bio::Graphics 2.09 being used.

Thx.

File does not exist:
/project/gbrowse/httpd_internal/htdocs/gbrowse2/tmp/images/MeDIP_GRC37/68d982487509afac095c90a3e15cde0a.png
File does not exist:
/project/gbrowse/httpd_internal/htdocs/gbrowse2/tmp/images/MeDIP_GRC37/0519d9e08c6a0f2a33669a761a311dc3.png
File does not exist:
/project/gbrowse/httpd_internal/htdocs/gbrowse2/tmp/images/MeDIP_GRC37/f61b414861095e8128165ee3da57726a.png
File does not exist:
/project/gbrowse/httpd_internal/htdocs/gbrowse2/tmp/images/MeDIP_GRC37/c14edd54d9aa3355091e728f2390214b.png
File does not exist:
/project/gbrowse/httpd_internal/htdocs/gbrowse2/tmp/images/MeDIP_GRC37/0456efef959e6f0f7ceaa9d6bcd74fbb.png
File does not exist:
/project/gbrowse/httpd_internal/htdocs/gbrowse2/tmp/images/MeDIP_GRC37/bb29925af4fa15270fcc71d7eca6903d.png

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Re: gbrowse 2.08 trouble generating images

Keiran Raine
Hi Sean,

Can you check that the location is not full?

df -h /project/gbrowse/httpd_internal/htdocs/gbrowse2/tmp

It could be that the writes failed and that caching is expecting to  
find the files (you may want to turn caching off too which figuring  
this out).

Regards,

Keiran Raine
Senior Computer Biologist
The Cancer Genome Project
Ext: 2100
[hidden email]




On 1 Jun 2010, at 10:38, Sean O'Keeffe wrote:

> /project/gbrowse/httpd_internal/htdocs/gbrowse2/tmp



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