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gbrowse details error

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Christelle Dantec

gbrowse details error

Hi,

I am having a problem with gbrowse_details.
If I look the detail for one feature, it works well. But If I want to
view the detail of another region, I obtained the page from my first
feature, not for the second where as th URL point to good region. It
seems to be a problem of a cached file. How can I resolved this?

Thanks,

Christelle

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Scott Cain

Re: gbrowse details error

Hi Christelle,

I doubt it is a cached file that is the problem; the gbrowse_details
pages aren't really files, the text for the page is generated on
demand by the gbrowse_details cgi. I wonder a few things: are the
URLs being properly generated in the gbrowse imagemap? Can you mouse
over several of them and make sure they are different? And when you
click on them, can you make sure that the URL that gets opened is in
the location bar of the new window/tab? Do you close the window/tab
of the "old" gbrowse_details page before opening the new one (it
shouldn't make a difference though, I was just wondering)?

Scott

On Thu, Nov 29, 2012 at 2:01 AM, Christelle Dantec
<[hidden email]> wrote:

> Hi,
>
> I am having a problem with gbrowse_details.
> If I look the detail for one feature, it works well. But If I want to
> view the detail of another region, I obtained the page from my first
> feature, not for the second where as th URL point to good region. It
> seems to be a problem of a cached file. How can I resolved this?
>
> Thanks,
>
> Christelle
>
>
> ------------------------------------------------------------------------------
> Keep yourself connected to Go Parallel:
> VERIFY Test and improve your parallel project with help from experts
> and peers. http://goparallel.sourceforge.net
> _______________________________________________
> Gmod-gbrowse mailing list
> [hidden email]
> https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse

--
------------------------------------------------------------------------
Scott Cain, Ph. D. scott at scottcain dot net
GMOD Coordinator (http://gmod.org/) 216-392-3087
Ontario Institute for Cancer Research

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Christelle Dantec

Re: gbrowse details error

Dear Scott,

I still have not solved my problem.
Here are the steps that lead to my bug.

1/ I blast a sequence 'A' and I want to see the result in GBrowse2.
I see my track in Gbrowse2 (automatic track name generated), and
if I click on the feature to obtain the sequence, it's ok.

2/ I start a new blast in a new window in my web browser.
I see my track in Gbrowse2 (automatic track name generated), but if I
click on the feature to obtain the sequence, I obtain the result of the
first sequence.
The URL is good, but not the display.

I notice that the track name generated automatically is the same in the
same in two cases...I suppose to be the problem.

I join a slide with screenshot to be clearer.

Thanks,

Christelle

Le jeudi 29 novembre 2012 à 09:12 -0500, Scott Cain a écrit :

> Hi Christelle,
>
> I doubt it is a cached file that is the problem; the gbrowse_details
> pages aren't really files, the text for the page is generated on
> demand by the gbrowse_details cgi. I wonder a few things: are the
> URLs being properly generated in the gbrowse imagemap? Can you mouse
> over several of them and make sure they are different? And when you
> click on them, can you make sure that the URL that gets opened is in
> the location bar of the new window/tab? Do you close the window/tab
> of the "old" gbrowse_details page before opening the new one (it
> shouldn't make a difference though, I was just wondering)?
>
> Scott
>
>
> On Thu, Nov 29, 2012 at 2:01 AM, Christelle Dantec
> <[hidden email]> wrote:
> > Hi,
> >
> > I am having a problem with gbrowse_details.
> > If I look the detail for one feature, it works well. But If I want to
> > view the detail of another region, I obtained the page from my first
> > feature, not for the second where as th URL point to good region. It
> > seems to be a problem of a cached file. How can I resolved this?
> >
> > Thanks,
> >
> > Christelle
> >
> >
> > ------------------------------------------------------------------------------
> > Keep yourself connected to Go Parallel:
> > VERIFY Test and improve your parallel project with help from experts
> > and peers. http://goparallel.sourceforge.net
> > _______________________________________________
> > Gmod-gbrowse mailing list
> > [hidden email]
> > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
>
>
>

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gbrowseError.pdf (194K) Download Attachment

Christelle Dantec

Re: gbrowse details error

Sorry,
this was an error on the screenshot in slide 2 on my previous pdf file
(due to a copy - paste), here the good pdf file.

Christelle

Le mercredi 05 décembre 2012 à 14:45 +0100, Christelle Dantec a écrit :

> Dear Scott,
>
> I still have not solved my problem.
> Here are the steps that lead to my bug.
>
> 1/ I blast a sequence 'A' and I want to see the result in GBrowse2.
> I see my track in Gbrowse2 (automatic track name generated), and
> if I click on the feature to obtain the sequence, it's ok.
>
> 2/ I start a new blast in a new window in my web browser.
> I see my track in Gbrowse2 (automatic track name generated), but if I
> click on the feature to obtain the sequence, I obtain the result of the
> first sequence.
> The URL is good, but not the display.
>
>
> I notice that the track name generated automatically is the same in the
> same in two cases...I suppose to be the problem.
>
> I join a slide with screenshot to be clearer.
>
> Thanks,
>
> Christelle
>
>
> Le jeudi 29 novembre 2012 à 09:12 -0500, Scott Cain a écrit :
> > Hi Christelle,
> >
> > I doubt it is a cached file that is the problem; the gbrowse_details
> > pages aren't really files, the text for the page is generated on
> > demand by the gbrowse_details cgi. I wonder a few things: are the
> > URLs being properly generated in the gbrowse imagemap? Can you mouse
> > over several of them and make sure they are different? And when you
> > click on them, can you make sure that the URL that gets opened is in
> > the location bar of the new window/tab? Do you close the window/tab
> > of the "old" gbrowse_details page before opening the new one (it
> > shouldn't make a difference though, I was just wondering)?
> >
> > Scott
> >
> >
> > On Thu, Nov 29, 2012 at 2:01 AM, Christelle Dantec
> > <[hidden email]> wrote:
> > > Hi,
> > >
> > > I am having a problem with gbrowse_details.
> > > If I look the detail for one feature, it works well. But If I want to
> > > view the detail of another region, I obtained the page from my first
> > > feature, not for the second where as th URL point to good region. It
> > > seems to be a problem of a cached file. How can I resolved this?
> > >
> > > Thanks,
> > >
> > > Christelle
> > >
> > >
> > > ------------------------------------------------------------------------------
> > > Keep yourself connected to Go Parallel:
> > > VERIFY Test and improve your parallel project with help from experts
> > > and peers. http://goparallel.sourceforge.net
> > > _______________________________________________
> > > Gmod-gbrowse mailing list
> > > [hidden email]
> > > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
> >
> >
> >
> ------------------------------------------------------------------------------
> LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial
> Remotely access PCs and mobile devices and provide instant support
> Improve your efficiency, and focus on delivering more value-add services
> Discover what IT Professionals Know. Rescue delivers
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gbrowseError2.pdf (259K) Download Attachment

girlwithglasses

Re: gbrowse details error

Can someone help Christelle with her query?

On Wed, Dec 5, 2012 at 6:04 AM, Christelle Dantec <[hidden email]> wrote:

Sorry,
this was an error on the screenshot in slide 2 on my previous pdf file
(due to a copy - paste), here the good pdf file.

Christelle

Le mercredi 05 décembre 2012 à 14:45 +0100, Christelle Dantec a écrit :

> Dear Scott,
>
> I still have not solved my problem.
> Here are the steps that lead to my bug.
>
> 1/ I blast a sequence 'A' and I want to see the result in GBrowse2.
> I see my track in Gbrowse2 (automatic track name generated), and
> if I click on the feature to obtain the sequence, it's ok.
>
> 2/ I start a new blast in a new window in my web browser.
> I see my track in Gbrowse2 (automatic track name generated), but if I
> click on the feature to obtain the sequence, I obtain the result of the
> first sequence.
> The URL is good, but not the display.
>
>
> I notice that the track name generated automatically is the same in the
> same in two cases...I suppose to be the problem.
>
> I join a slide with screenshot to be clearer.
>
> Thanks,
>
> Christelle
>
>
> Le jeudi 29 novembre 2012 à 09:12 -0500, Scott Cain a écrit :
> > Hi Christelle,
> >
> > I doubt it is a cached file that is the problem; the gbrowse_details
> > pages aren't really files, the text for the page is generated on
> > demand by the gbrowse_details cgi. I wonder a few things: are the
> > URLs being properly generated in the gbrowse imagemap? Can you mouse
> > over several of them and make sure they are different? And when you
> > click on them, can you make sure that the URL that gets opened is in
> > the location bar of the new window/tab? Do you close the window/tab
> > of the "old" gbrowse_details page before opening the new one (it
> > shouldn't make a difference though, I was just wondering)?
> >
> > Scott
> >
> >
> > On Thu, Nov 29, 2012 at 2:01 AM, Christelle Dantec
> > <[hidden email]> wrote:
> > > Hi,
> > >
> > > I am having a problem with gbrowse_details.
> > > If I look the detail for one feature, it works well. But If I want to
> > > view the detail of another region, I obtained the page from my first
> > > feature, not for the second where as th URL point to good region. It
> > > seems to be a problem of a cached file. How can I resolved this?
> > >
> > > Thanks,
> > >
> > > Christelle
> > >
> > >
> > > ------------------------------------------------------------------------------
> > > Keep yourself connected to Go Parallel:
> > > VERIFY Test and improve your parallel project with help from experts
> > > and peers. http://goparallel.sourceforge.net
> > > _______________________________________________
> > > Gmod-gbrowse mailing list
> > > [hidden email]
> > > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
> >
> >
> >

> ------------------------------------------------------------------------------
> LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial
> Remotely access PCs and mobile devices and provide instant support
> Improve your efficiency, and focus on delivering more value-add services
> Discover what IT Professionals Know. Rescue delivers
> http://p.sf.net/sfu/logmein_12329d2d

> _______________________________________________ Gmod-gbrowse mailing list [hidden email] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse

------------------------------------------------------------------------------
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Remotely access PCs and mobile devices and provide instant support
Improve your efficiency, and focus on delivering more value-add services
Discover what IT Professionals Know. Rescue delivers
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_______________________________________________
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--
Amelia Ireland
GMOD Community Support || http://gmod.org

Christelle Dantec

Re: gbrowse details error

In reply to this post by Christelle Dantec

Dear all,

allways with my pb..
When I want to see the result of BLAST in Gbrowse2, I try to name my new
track with parameters in the URL, but I have no success with this, and
the name is automatically generated.
Is there a way to impose the track name?

Best wishes

Christelle

Le mercredi 05 décembre 2012 à 15:04 +0100, Christelle Dantec a écrit :

> Sorry,
> this was an error on the screenshot in slide 2 on my previous pdf file
> (due to a copy - paste), here the good pdf file.
>
> Christelle
>
>
> Le mercredi 05 décembre 2012 à 14:45 +0100, Christelle Dantec a écrit :
> > Dear Scott,
> >
> > I still have not solved my problem.
> > Here are the steps that lead to my bug.
> >
> > 1/ I blast a sequence 'A' and I want to see the result in GBrowse2.
> > I see my track in Gbrowse2 (automatic track name generated), and
> > if I click on the feature to obtain the sequence, it's ok.
> >
> > 2/ I start a new blast in a new window in my web browser.
> > I see my track in Gbrowse2 (automatic track name generated), but if I
> > click on the feature to obtain the sequence, I obtain the result of the
> > first sequence.
> > The URL is good, but not the display.
> >
> >
> > I notice that the track name generated automatically is the same in the
> > same in two cases...I suppose to be the problem.
> >
> > I join a slide with screenshot to be clearer.
> >
> > Thanks,
> >
> > Christelle
> >
> >
> > Le jeudi 29 novembre 2012 à 09:12 -0500, Scott Cain a écrit :
> > > Hi Christelle,
> > >
> > > I doubt it is a cached file that is the problem; the gbrowse_details
> > > pages aren't really files, the text for the page is generated on
> > > demand by the gbrowse_details cgi. I wonder a few things: are the
> > > URLs being properly generated in the gbrowse imagemap? Can you mouse
> > > over several of them and make sure they are different? And when you
> > > click on them, can you make sure that the URL that gets opened is in
> > > the location bar of the new window/tab? Do you close the window/tab
> > > of the "old" gbrowse_details page before opening the new one (it
> > > shouldn't make a difference though, I was just wondering)?
> > >
> > > Scott
> > >
> > >
> > > On Thu, Nov 29, 2012 at 2:01 AM, Christelle Dantec
> > > <[hidden email]> wrote:
> > > > Hi,
> > > >
> > > > I am having a problem with gbrowse_details.
> > > > If I look the detail for one feature, it works well. But If I want to
> > > > view the detail of another region, I obtained the page from my first
> > > > feature, not for the second where as th URL point to good region. It
> > > > seems to be a problem of a cached file. How can I resolved this?
> > > >
> > > > Thanks,
> > > >
> > > > Christelle
> > > >
> > > >
> > > > ------------------------------------------------------------------------------
> > > > Keep yourself connected to Go Parallel:
> > > > VERIFY Test and improve your parallel project with help from experts
> > > > and peers. http://goparallel.sourceforge.net
> > > > _______________________________________________
> > > > Gmod-gbrowse mailing list
> > > > [hidden email]
> > > > https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
> > >
> > >
> > >
> > ------------------------------------------------------------------------------
> > LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial
> > Remotely access PCs and mobile devices and provide instant support
> > Improve your efficiency, and focus on delivering more value-add services
> > Discover what IT Professionals Know. Rescue delivers
> > http://p.sf.net/sfu/logmein_12329d2d
> > _______________________________________________ Gmod-gbrowse mailing list [hidden email] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
> ------------------------------------------------------------------------------
> LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial
> Remotely access PCs and mobile devices and provide instant support
> Improve your efficiency, and focus on delivering more value-add services
> Discover what IT Professionals Know. Rescue delivers
> http://p.sf.net/sfu/logmein_12329d2d
> _______________________________________________ Gmod-gbrowse mailing list [hidden email] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse