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Dear Gbrowse team,
i have a gbrowse2 up and running. The only problem is that i can't get fcgi to work: Apache error.log: --- (104)Connection reset by peer: mod_fcgid: error reading data from FastCGI server Premature end of script headers: gbrowse --- My gbrowse2.conf Apache fcgi part looks like this: --- <IfModule mod_fcgid.c> Alias /fgb2 "/usr/lib/cgi-bin/gb2" <Location /fgb2> SetHandler fcgid-script </Location> FcgidInitialEnv GBROWSE_CONF /etc/gbrowse2 FcgidMinProcessesPerClass 1 FcgidIOTimeout 600 FcgidBusyTimeout 600 </IfModule> --- I am using gbrowse version 2.48 on a Ubuntu 10.04. Now, i would like to debug the problem but i don't know how. I can see the cgi-bin executables in: /usr/lib/cgi-bin/gb2 Any idea/help appreciated! Kind regards, Gregor -- Gregor Rot Bioinformatics Laboratory Faculty of computer and information science SI-1000 Ljubljana Slovenia http://www.fri.uni-lj.si/en/gregor-rot ------------------------------------------------------------------------------ For Developers, A Lot Can Happen In A Second. Boundary is the first to Know...and Tell You. Monitor Your Applications in Ultra-Fine Resolution. Try it FREE! http://p.sf.net/sfu/Boundary-d2dvs2 _______________________________________________ Gmod-gbrowse mailing list [hidden email] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
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Hi all, can anybody help with the problem below?
Thanks, Gregor -------- Original Message -------- Subject: [Gmod-gbrowse] gbrowse + fcgi Date: Fri, 13 Apr 2012 11:14:52 +0200 From: Gregor Rot <[hidden email]> To: Gbrowse <[hidden email]> Dear Gbrowse team, i have a gbrowse2 up and running. The only problem is that i can't get fcgi to work: Apache error.log: --- (104)Connection reset by peer: mod_fcgid: error reading data from FastCGI server Premature end of script headers: gbrowse --- My gbrowse2.conf Apache fcgi part looks like this: --- <IfModule mod_fcgid.c> Alias /fgb2 "/usr/lib/cgi-bin/gb2" <Location /fgb2> SetHandler fcgid-script </Location> FcgidInitialEnv GBROWSE_CONF /etc/gbrowse2 FcgidMinProcessesPerClass 1 FcgidIOTimeout 600 FcgidBusyTimeout 600 </IfModule> --- I am using gbrowse version 2.48 on a Ubuntu 10.04. Now, i would like to debug the problem but i don't know how. I can see the cgi-bin executables in: /usr/lib/cgi-bin/gb2 Any idea/help appreciated! Kind regards, Gregor -- Gregor Rot Bioinformatics Laboratory Faculty of computer and information science SI-1000 Ljubljana Slovenia http://www.fri.uni-lj.si/en/gregor-rot ------------------------------------------------------------------------------ For Developers, A Lot Can Happen In A Second. Boundary is the first to Know...and Tell You. Monitor Your Applications in Ultra-Fine Resolution. Try it FREE! http://p.sf.net/sfu/Boundary-d2dvs2 _______________________________________________ Gmod-gbrowse mailing list [hidden email] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
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Hi Gregor, Quoting Gregor Rot <[hidden email]>: > Apache error.log: > --- > (104)Connection reset by peer: mod_fcgid: error reading data from > FastCGI server > Premature end of script headers: gbrowse > --- > > My gbrowse2.conf Apache fcgi part looks like this: > > --- > <IfModule mod_fcgid.c> > Alias /fgb2 "/usr/lib/cgi-bin/gb2" > <Location /fgb2> > SetHandler fcgid-script > </Location> > FcgidInitialEnv GBROWSE_CONF /etc/gbrowse2 > FcgidMinProcessesPerClass 1 > FcgidIOTimeout 600 > FcgidBusyTimeout 600 > </IfModule> > --- I don't see anything wrong with the fcgi part in your Apache configuration. When you access the server, is that the only error message you get in error.log? Most likely, you will get a set of error messages -- is that the first one? The other thing you want to look at is whether or not you have enabled that module. If so, should see it in /etc/apache2/mods-enabled/. I don't know what it was called in 10.04, but I guess it should be fcgid.{conf|load}. if it isn't there, you need to enable it with a2enmod. If it is not there nor in mods-available, then you need to install it (of course). Something else you can try is to see if fastcgi works. Perhaps trying it will give you clues about what's wrong. Before both, you should confirm that CGI works. I presume you already have? Sorry, I can't think of anything else that could be wrong... Ray ------------------------------------------------- This e-mail is sent by CUHK WebMail http://webmail.cuhk.edu.hk ------------------------------------------------------------------------------ For Developers, A Lot Can Happen In A Second. Boundary is the first to Know...and Tell You. Monitor Your Applications in Ultra-Fine Resolution. Try it FREE! http://p.sf.net/sfu/Boundary-d2dvs2 _______________________________________________ Gmod-gbrowse mailing list [hidden email] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
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Hi Ray,
thank you, with you help (checking if mod_fcgi works) i found a perl fastcgi test script by coincidence, and it was not working. The solution was to install: sudo apt-get install libfcgi-perl on Ubuntu (so FCGI perl was missing). Now everything is working, Thanks, Gregor On 4/19/2012 10:18 AM, Raymond Wan wrote: > > Hi Gregor, > > > Quoting Gregor Rot<[hidden email]>: > >> Apache error.log: >> --- >> (104)Connection reset by peer: mod_fcgid: error reading data from >> FastCGI server >> Premature end of script headers: gbrowse >> --- >> >> My gbrowse2.conf Apache fcgi part looks like this: >> >> --- >> <IfModule mod_fcgid.c> >> Alias /fgb2 "/usr/lib/cgi-bin/gb2" >> <Location /fgb2> >> SetHandler fcgid-script >> </Location> >> FcgidInitialEnv GBROWSE_CONF /etc/gbrowse2 >> FcgidMinProcessesPerClass 1 >> FcgidIOTimeout 600 >> FcgidBusyTimeout 600 >> </IfModule> >> --- > > > I don't see anything wrong with the fcgi part in your Apache configuration. > When you access the server, is that the only error message you get in > error.log? Most likely, you will get a set of error messages -- is that the > first one? > > The other thing you want to look at is whether or not you have enabled that > module. If so, should see it in /etc/apache2/mods-enabled/. I don't know what > it was called in 10.04, but I guess it should be fcgid.{conf|load}. if it isn't > there, you need to enable it with a2enmod. > > If it is not there nor in mods-available, then you need to install it (of > course). > > Something else you can try is to see if fastcgi works. Perhaps trying it will > give you clues about what's wrong. Before both, you should confirm that CGI > works. I presume you already have? > > Sorry, I can't think of anything else that could be wrong... > > Ray > > > > > ------------------------------------------------- > This e-mail is sent by CUHK WebMail http://webmail.cuhk.edu.hk > ------------------------------------------------------------------------------ For Developers, A Lot Can Happen In A Second. Boundary is the first to Know...and Tell You. Monitor Your Applications in Ultra-Fine Resolution. Try it FREE! http://p.sf.net/sfu/Boundary-d2dvs2 _______________________________________________ Gmod-gbrowse mailing list [hidden email] https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse |
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