gbrowse problem

classic Classic list List threaded Threaded
3 messages Options
Reply | Threaded
Open this post in threaded view
|

gbrowse problem

Tevfik Hamdi Kitapci
Hi,
I installed gbrowse following this:


I can see the main page when I point my browser to


I am trying to visualize the volvox data set as described here


I followed all the steps and double checked to make sure I did everything and set all the permissions when I point my browser to http://localhost/cgi-bin/gb2/gbrowse/volvox I got the following message:

I am running Ubuntu 14.04.4 LTS so I set the my_user_name to www-data 

Not Found

The requested URL /cgi-bin/gb2/gbrowse/volvox was not found on this server.


Apache/2.4.7 (Ubuntu) Server at localhost Port 80

I checked the error.log located at /var/log/apache2/error.log there is no message.

Then I tried to point my browser to: http://localhost/gb2/gbrowse/volvox this time I am getting the following:

Forbidden

You don't have permission to access /gb2/gbrowse/volvox on this server.


Apache/2.4.7 (Ubuntu) Server at localhost Port 80

this time I have this message added to the /var/log/apache2/error.log file

[Thu Mar 31 16:14:44.349626 2016] [authz_core:error] [pid 12936:tid 140590595376896] [client 127.0.0.1:58597] AH01630: client denied by server configuration: /usr/lib/cgi-bin/gbrowse/gbrowse

I will appreciate if you can help me with this problem

Thanks a lot
Best Regards
T. Hamdi Kitapci

------------------------------------------------------------------------------
Transform Data into Opportunity.
Accelerate data analysis in your applications with
Intel Data Analytics Acceleration Library.
Click to learn more.
http://pubads.g.doubleclick.net/gampad/clk?id=278785471&iu=/4140
_______________________________________________
Gmod-gbrowse mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
Reply | Threaded
Open this post in threaded view
|

Re: gbrowse problem

Scott Cain
Hi Tevfik,

That problem is described here:

http://stackoverflow.com/questions/18392741/apache2-ah01630-client-denied-by-server-configuration

The wiki page should be updated to reflect this. Let us know if you need more help.

Scott


Sent from my iPhone

> On Mar 31, 2016, at 4:17 PM, Tevfik Hamdi Kitapci <[hidden email]> wrote:
>
> client denied by server configuration

------------------------------------------------------------------------------
Transform Data into Opportunity.
Accelerate data analysis in your applications with
Intel Data Analytics Acceleration Library.
Click to learn more.
http://pubads.g.doubleclick.net/gampad/clk?id=278785471&iu=/4140
_______________________________________________
Gmod-gbrowse mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
Reply | Threaded
Open this post in threaded view
|

Re: gbrowse problem

Tevfik Hamdi Kitapci
Dear Scott et al.,
I figured out that my problem was related to cgi-bin not being activated on ubuntu be default. I found the solution here:

after I executed this 
sudo a2enmod cgi
sudo service apache2 restart
gbrowse2 works as expected for the example volvox data set

Thanks
Best Regards
T. Hamdi Kitapci


On Thu, Mar 31, 2016 at 8:26 PM, Scott Cain <[hidden email]> wrote:
Hi Tevfik,

That problem is described here:

https://urldefense.proofpoint.com/v2/url?u=http-3A__stackoverflow.com_questions_18392741_apache2-2Dah01630-2Dclient-2Ddenied-2Dby-2Dserver-2Dconfiguration&d=CwIFAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=dd3SyH59HpO2n3XuP3M68g&m=x-G6gBaUI1ShRlSvLHEdAondbk8FoZ9QWYFEnOoMZDk&s=EdDsU6r92vjMoiGrbr1CTDyRN-JDNvE9V-oXM1DVtGQ&e=

The wiki page should be updated to reflect this. Let us know if you need more help.

Scott


Sent from my iPhone

> On Mar 31, 2016, at 4:17 PM, Tevfik Hamdi Kitapci <[hidden email]> wrote:
>
> client denied by server configuration


------------------------------------------------------------------------------
Transform Data into Opportunity.
Accelerate data analysis in your applications with
Intel Data Analytics Acceleration Library.
Click to learn more.
http://pubads.g.doubleclick.net/gampad/clk?id=278785471&iu=/4140
_______________________________________________
Gmod-gbrowse mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse