getting balloon click to use the URL generated by 'link = AUTO'

classic Classic list List threaded Threaded
4 messages Options
Reply | Threaded
Open this post in threaded view
|

getting balloon click to use the URL generated by 'link = AUTO'

Keiran Raine
Hi,

I'm trying to get balloon click to use the URL generated by the AUTO option that can be applied to the link option.

I could construct the URL but I can't figure out where I would get the datasource component of the URL:

e.g. 'link = AUTO' generates this:


And I can construct the following which gives the same page, but how can I determine the source (in red)?

balloon click = http://.../gbrowse_details/PD10021_37_58?name=$name;feature_id=$id;db_id=REFSEQ%3Adatabase

or

balloon click = url:../../gbrowse_details/PD10021_37_58?name=$name;feature_id=$id;db_id=REFSEQ%3Adatabase

Am I going about this the wrong way?

Thanks,

Keiran Raine
Principal Bioinformatician
Cancer Genome Project
Wellcome Trust Sanger institute

Tel:+44 (0)1223 834244 Ext: 7703
Office: H104


-- The Wellcome Trust Sanger Institute is operated by Genome Rese arch Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

------------------------------------------------------------------------------
Introducing Performance Central, a new site from SourceForge and
AppDynamics. Performance Central is your source for news, insights,
analysis and resources for efficient Application Performance Management.
Visit us today!
http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk
_______________________________________________
Gmod-gbrowse mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
Reply | Threaded
Open this post in threaded view
|

Re: getting balloon click to use the URL generated by 'link = AUTO'

Lincoln Stein
Don't you know the source because the directive is in the source's configuration file? Maybe you are using the #include functionality?

I am happy to add a new substitution string that gives you the current source.

Lincoln


On Wed, Aug 21, 2013 at 7:49 AM, Keiran Raine <[hidden email]> wrote:
Hi,

I'm trying to get balloon click to use the URL generated by the AUTO option that can be applied to the link option.

I could construct the URL but I can't figure out where I would get the datasource component of the URL:

e.g. 'link = AUTO' generates this:


And I can construct the following which gives the same page, but how can I determine the source (in red)?

balloon click = http://.../gbrowse_details/PD10021_37_58?name=$name;feature_id=$id;db_id=REFSEQ%3Adatabase

or

balloon click = url:../../gbrowse_details/PD10021_37_58?name=$name;feature_id=$id;db_id=REFSEQ%3Adatabase

Am I going about this the wrong way?

Thanks,

Keiran Raine
Principal Bioinformatician
Cancer Genome Project
Wellcome Trust Sanger institute

Tel:<a href="tel:%2B44%20%280%291223%20834244%C2%A0Ext%3A%207703" value="+441223834244" target="_blank">+44 (0)1223 834244 Ext: 7703
Office: H104


-- The Wellcome Trust Sanger Institute is operated by Genome Rese arch Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

------------------------------------------------------------------------------
Introducing Performance Central, a new site from SourceForge and
AppDynamics. Performance Central is your source for news, insights,
analysis and resources for efficient Application Performance Management.
Visit us today!
http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk
_______________________________________________
Gmod-gbrowse mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse




--
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <[hidden email]>

------------------------------------------------------------------------------
Learn the latest--Visual Studio 2012, SharePoint 2013, SQL 2012, more!
Discover the easy way to master current and previous Microsoft technologies
and advance your career. Get an incredible 1,500+ hours of step-by-step
tutorial videos with LearnDevNow. Subscribe today and save!
http://pubads.g.doubleclick.net/gampad/clk?id=58040911&iu=/4140/ostg.clktrk
_______________________________________________
Gmod-gbrowse mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
Reply | Threaded
Open this post in threaded view
|

Re: getting balloon click to use the URL generated by 'link = AUTO'

Keiran Raine
Hi Lincoln,

You are correct, I add the reference tracks config via #include.  However only the db_adaptor definition is dependent on the species, and so the track config is generic, hence my problem and the only bit in the include.

Ideally I'd like to be able to use:

balloon click = AUTO

I was trying to hack the same thing

Regards,

Keiran Raine
Principal Bioinformatician
Cancer Genome Project
Wellcome Trust Sanger Institute

Tel:+44 (0)1223 834244 Ext: 7703
Office: H104

On 29 Aug 2013, at 21:49, Lincoln Stein <[hidden email]> wrote:

Don't you know the source because the directive is in the source's configuration file? Maybe you are using the #include functionality?

I am happy to add a new substitution string that gives you the current source.

Lincoln


On Wed, Aug 21, 2013 at 7:49 AM, Keiran Raine <[hidden email]> wrote:
Hi,

I'm trying to get balloon click to use the URL generated by the AUTO option that can be applied to the link option.

I could construct the URL but I can't figure out where I would get the datasource component of the URL:

e.g. 'link = AUTO' generates this:


And I can construct the following which gives the same page, but how can I determine the source (in red)?

balloon click = http://.../gbrowse_details/PD10021_37_58?name=$name;feature_id=$id;db_id=REFSEQ%3Adatabase

or

balloon click = url:../../gbrowse_details/PD10021_37_58?name=$name;feature_id=$id;db_id=REFSEQ%3Adatabase

Am I going about this the wrong way?

Thanks,

Keiran Raine
Principal Bioinformatician
Cancer Genome Project
Wellcome Trust Sanger institute

Tel:<a href="tel:%2B44%20%280%291223%20834244%C2%A0Ext%3A%207703" value="+441223834244" target="_blank">+44 (0)1223 834244 Ext: 7703
Office: H104


-- The Wellcome Trust Sanger Institute is operated by Genome Rese arch Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

------------------------------------------------------------------------------
Introducing Performance Central, a new site from SourceForge and
AppDynamics. Performance Central is your source for news, insights,
analysis and resources for efficient Application Performance Management.
Visit us today!
http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk
_______________________________________________
Gmod-gbrowse mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse




--
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <[hidden email]>


-- The Wellcome Trust Sanger Institute is operated by Genome Rese arch Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

------------------------------------------------------------------------------
Learn the latest--Visual Studio 2012, SharePoint 2013, SQL 2012, more!
Discover the easy way to master current and previous Microsoft technologies
and advance your career. Get an incredible 1,500+ hours of step-by-step
tutorial videos with LearnDevNow. Subscribe today and save!
http://pubads.g.doubleclick.net/gampad/clk?id=58040911&iu=/4140/ostg.clktrk
_______________________________________________
Gmod-gbrowse mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse
Reply | Threaded
Open this post in threaded view
|

Re: getting balloon click to use the URL generated by 'link = AUTO'

Lincoln Stein
Could you enter a bug/feature request for this and describe what you want to see as the contents of the balloon? Everything that's in the details page? This will be quite large.

Lincoln


On Thu, Aug 29, 2013 at 5:47 PM, Keiran Raine <[hidden email]> wrote:
Hi Lincoln,

You are correct, I add the reference tracks config via #include.  However only the db_adaptor definition is dependent on the species, and so the track config is generic, hence my problem and the only bit in the include.

Ideally I'd like to be able to use:

balloon click = AUTO

I was trying to hack the same thing

Regards,


Keiran Raine
Principal Bioinformatician
Cancer Genome Project
Wellcome Trust Sanger Institute

Tel:<a href="tel:%2B44%20%280%291223%20834244%C2%A0Ext%3A%207703" value="+441223834244" target="_blank">+44 (0)1223 834244 Ext: 7703
Office: H104

On 29 Aug 2013, at 21:49, Lincoln Stein <[hidden email]> wrote:

Don't you know the source because the directive is in the source's configuration file? Maybe you are using the #include functionality?

I am happy to add a new substitution string that gives you the current source.

Lincoln


On Wed, Aug 21, 2013 at 7:49 AM, Keiran Raine <[hidden email]> wrote:
Hi,

I'm trying to get balloon click to use the URL generated by the AUTO option that can be applied to the link option.

I could construct the URL but I can't figure out where I would get the datasource component of the URL:

e.g. 'link = AUTO' generates this:


And I can construct the following which gives the same page, but how can I determine the source (in red)?

balloon click = http://.../gbrowse_details/PD10021_37_58?name=$name;feature_id=$id;db_id=REFSEQ%3Adatabase

or

balloon click = url:../../gbrowse_details/PD10021_37_58?name=$name;feature_id=$id;db_id=REFSEQ%3Adatabase

Am I going about this the wrong way?

Thanks,

Keiran Raine
Principal Bioinformatician
Cancer Genome Project
Wellcome Trust Sanger institute

Tel:<a href="tel:%2B44%20%280%291223%20834244%C2%A0Ext%3A%207703" value="+441223834244" target="_blank">+44 (0)1223 834244 Ext: 7703
Office: H104


-- The Wellcome Trust Sanger Institute is operated by Genome Rese arch Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.

------------------------------------------------------------------------------
Introducing Performance Central, a new site from SourceForge and
AppDynamics. Performance Central is your source for news, insights,
analysis and resources for efficient Application Performance Management.
Visit us today!
http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk
_______________________________________________
Gmod-gbrowse mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse




--
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
<a href="tel:416%20673-8514" value="+14166738514" target="_blank">416 673-8514
Assistant: Renata Musa <[hidden email]>


-- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.



--
Lincoln D. Stein
Director, Informatics and Biocomputing Platform
Ontario Institute for Cancer Research
101 College St., Suite 800
Toronto, ON, Canada M5G0A3
416 673-8514
Assistant: Renata Musa <[hidden email]>

------------------------------------------------------------------------------
Learn the latest--Visual Studio 2012, SharePoint 2013, SQL 2012, more!
Discover the easy way to master current and previous Microsoft technologies
and advance your career. Get an incredible 1,500+ hours of step-by-step
tutorial videos with LearnDevNow. Subscribe today and save!
http://pubads.g.doubleclick.net/gampad/clk?id=58040911&iu=/4140/ostg.clktrk
_______________________________________________
Gmod-gbrowse mailing list
[hidden email]
https://lists.sourceforge.net/lists/listinfo/gmod-gbrowse