Hello,
Does the btab format retain the information to group hsps that have been
combined to generate an E-value beyond assuming consecutive, identical
hsps are grouped? We're looking a transcriptome data and could have
millions of hsps per pipeline, so I'm hesitant to automate an assumption.
BioPerl provides an 'n()' method fo HSPs that resolves this unambiguously.
I'm considering sticking it in the empty column 15 "segment_number" in our
local blast2btab.pl or adding a new column at the end. Does anyone have a
better idea for handling this? Does anyone care enough to commit a
consistent method of doing it to svn?
Cheers and Thanks,
Chris
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