incorporating RNA-SEQ data into MAKER

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incorporating RNA-SEQ data into MAKER

katebush-2
Does anyone have an answer to July 29 post on RNA-SEQ?  I'm also
trying to incorporate RNA-seq data into the annotation process.  If
the est_reads is not yet fully implemented, any opinions on other ways
to best incorporate RNA-SEQ data...considering either supplying output
of a spliced-alignment program such as tophat as est_gff:  and/or
assembled contigs as ests?

Thanks,

Kate

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