largest genome annotated?

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largest genome annotated?

Andor J Kiss
What's the largest genome that's been annotated with Maker2?

Thanks,
--
________________________________________________________________________________________________________________________
Andor J Kiss, PhD
Director - Center for Bioinformatics & Functional Genomics
086 Pearson Hall - Miami University
700 East High Street, Oxford
Ohio 45056
USA

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Re: largest genome annotated?

Carson Holt-2
The Sugar Pine. It's 31 gigabases in length and the largest genome ever sequenced. The Loblolly Pine (second largest genome ever sequenced at just over 20 gigabases) was also annotated using MAKER.

—Carson



On Jun 11, 2018, at 11:56 AM, Andor J Kiss <[hidden email]> wrote:

What's the largest genome that's been annotated with Maker2?

Thanks,
--
________________________________________________________________________________________________________________________
Andor J Kiss, PhD
Director - Center for Bioinformatics & Functional Genomics
086 Pearson Hall - Miami University
700 East High Street, Oxford
Ohio 45056
USA

eMAIL: [hidden email] 
Telephone: +1 (513) 529-4280
Fax: +1 (513) 529-2431
Ring ID: andorjkiss


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maker-devel mailing list
[hidden email]
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org


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Re: largest genome annotated?

Carson Holt-2
Correction. The recently published axolotl just barely edged out the Sugar Pine in size a couple of months ago. They did not really annotate it though, instead they independently assembled the transcriptome from mRNA-seq and aligned those where they could.

—Carson


On Jun 11, 2018, at 12:05 PM, Carson Holt <[hidden email]> wrote:

The Sugar Pine. It's 31 gigabases in length and the largest genome ever sequenced. The Loblolly Pine (second largest genome ever sequenced at just over 20 gigabases) was also annotated using MAKER.

—Carson



On Jun 11, 2018, at 11:56 AM, Andor J Kiss <[hidden email]> wrote:

What's the largest genome that's been annotated with Maker2?

Thanks,
--
________________________________________________________________________________________________________________________
Andor J Kiss, PhD
Director - Center for Bioinformatics & Functional Genomics
086 Pearson Hall - Miami University
700 East High Street, Oxford
Ohio 45056
USA

eMAIL: [hidden email] 
Telephone: +1 (513) 529-4280
Fax: +1 (513) 529-2431
Ring ID: andorjkiss


_______________________________________________
maker-devel mailing list
[hidden email]
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org



_______________________________________________
maker-devel mailing list
[hidden email]
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org