multiple file input not taken into account in workflows

[Christophe Antoniewski]

Hi

We recently deployed a new galaxy instance for production, under Apache2 and postgresql. Although I am not familiar with postgresql, I followed the instructions in the wiki and it seems overall to work.

However, there is at least an obvious issue with this new instance :

when running a workflow with multiple files in input, the job starts well with the first file and proceeds until completion of the whole workflow, then stops, not taking care of the other files defined in the multiple input, and, more irritating, not reporting any bug (at least in the front).

The local galaxy instance we've been running for 1 year now under SQlite and the internal web server, is doing well in contrast, so that I suspect a misconfiguration in postgresql, primarily, (I don't really see how Apache could pervert this aspect, but I am not so much a geek so I may be wrong)

I tried to find traces of the same issue in the forum but did not find something yet.

Any help / suggestion are welcome

Cheers

--
Christophe

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[Dannon Baker]

Christophe,

This is an issue that was resolved in changeset 6368:52de9815a7c4.  The changeset hasn't made it into galaxy-dist yet, which I assume you're using, but that should happen very soon.  You could wait for the update, or if you'd like, you can pull the changes directly from galaxy-central and everything should work fine.

Thanks,

Dannon



On Jan 8, 2012, at 7:21 PM, Christophe Antoniewski wrote:

> Hi
>
> We recently deployed a new galaxy instance for production, under Apache2 and postgresql. Although I am not familiar with postgresql, I followed the instructions in the wiki and it seems overall to work.
> However, there is at least an obvious issue with this new instance :
> when running a workflow with multiple files in input, the job starts well with the first file and proceeds until completion of the whole workflow, then stops, not taking care of the other files defined in the multiple input, and, more irritating, not reporting any bug (at least in the front).
>
> The local galaxy instance we've been running for 1 year now under SQlite and the internal web server, is doing well in contrast, so that I suspect a misconfiguration in postgresql, primarily, (I don't really see how Apache could pervert this aspect, but I am not so much a geek so I may be wrong)
>
> I tried to find traces of the same issue in the forum but did not find something yet.
>
> Any help / suggestion are welcome
>
> Cheers
>
> --
> Christophe
>
> ___________________________________________________________
> Please keep all replies on the list by using "reply all"
> in your mail client.  To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
>
>  http://lists.bx.psu.edu/

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[Christophe Antoniewski]

Dannon,

This is so great to get a meanful answer 12 min after my post.

Thank you !

Chris


Le lundi 9 janvier 2012, Dannon Baker <[hidden email]> a écrit :
> Christophe,
>
> This is an issue that was resolved in changeset 6368:52de9815a7c4.  The changeset hasn't made it into galaxy-dist yet, which I assume you're using, but that should happen very soon.  You could wait for the update, or if you'd like, you can pull the changes directly from galaxy-central and everything should work fine.
>

> Thanks,
>
> Dannon
>
>
>
> On Jan 8, 2012, at 7:21 PM, Christophe Antoniewski wrote:
>
>> Hi
>>
>> We recently deployed a new galaxy instance for production, under Apache2 and postgresql. Although I am not familiar with postgresql, I followed the instructions in the wiki and it seems overall to work.

>> However, there is at least an obvious issue with this new instance :
>> when running a workflow with multiple files in input, the job starts well with the first file and proceeds until completion of the whole workflow, then stops, not taking care of the other files defined in the multiple input, and, more irritating, not reporting any bug (at least in the front).
>>
>> The local galaxy instance we've been running for 1 year now under SQlite and the internal web server, is doing well in contrast, so that I suspect a misconfiguration in postgresql, primarily, (I don't really see how Apache could pervert this aspect, but I am not so much a geek so I may be wrong)
>>
>> I tried to find traces of the same issue in the forum but did not find something yet.
>>
>> Any help / suggestion are welcome
>>
>> Cheers
>>
>> --
>> Christophe
>>
>> ___________________________________________________________
>> Please keep all replies on the list by using "reply all"
>> in your mail client.  To manage your subscriptions to this
>> and other Galaxy lists, please use the interface at:
>>
>>  http://lists.bx.psu.edu/
>
>

--
Christophe Antoniewski

1 rue du Dahomey

75011 Paris

[phone]

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