name of gene model

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name of gene model

Quanwei Zhang
Hello:

Would you please explain how the genes were named? Do similar names indicate sequence similarities (e.g., maker-Contig3217-snap-gene-35.13-mRNA-1, maker-Contig3217-snap-gene-35.14-mRNA-1)?

maker-Contig2667-augustus-gene-266.22-mRNA-1;
maker-Contig2667-snap-gene-266.5-mRNA-1;

maker-Contig3217-snap-gene-35.13-mRNA-1;
maker-Contig3217-snap-gene-35.14-mRNA-1;
maker-Contig3217-snap-gene-35.15-mRNA-1;
maker-Contig3217-snap-gene-35.16-mRNA-1

Thank you

Best
Quanwei

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Re: name of gene model

Carson Holt-2
The only info in the name is the source program of the model (i.e. snap/augustus). The numbers are just meaningless iterators.

—Carson


On Jan 22, 2018, at 10:23 AM, Quanwei Zhang <[hidden email]> wrote:

Hello:

Would you please explain how the genes were named? Do similar names indicate sequence similarities (e.g., maker-Contig3217-snap-gene-35.13-mRNA-1, maker-Contig3217-snap-gene-35.14-mRNA-1)?

maker-Contig2667-augustus-gene-266.22-mRNA-1;
maker-Contig2667-snap-gene-266.5-mRNA-1;

maker-Contig3217-snap-gene-35.13-mRNA-1;
maker-Contig3217-snap-gene-35.14-mRNA-1;
maker-Contig3217-snap-gene-35.15-mRNA-1;
maker-Contig3217-snap-gene-35.16-mRNA-1

Thank you

Best
Quanwei
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maker-devel mailing list
[hidden email]
http://box290.bluehost.com/mailman/listinfo/maker-devel_yandell-lab.org


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