Hi everyone, We are facing some troubles when configuring ergatis to submit the main job on the cluster. The produced command line is: sudo -E -u ng6 /SGE/n1ge62/bin/lx24-amd64/qsub -V -wd /work/ng6/ergatis/tmp/workflow/346 -b y -q bigmemq /usr/local/bioinfo/src/workflowng6/wf-3.1.5/RunWorkfl ow -i /work/ng6/ergatis/workflow/runtime/pipeline/346/pipeline.xml -m 10 --init-heap=100m --max-heap=1024m --logconf=/usr/local/bioinfo/src/workflowng6/wf-3.1 .5/log4j.properties >& /work/ng6/ergatis/workflow/runtime/pipeline/346/pipeline.xml.run.out However we catch the follwing error: sudo: no tty present and no askpass program specified any idea ? thanks, Jerome ------------------------------------------------------------------------------ Try before you buy = See our experts in action! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-dev2 _______________________________________________ Ergatis-users mailing list [hidden email] https://lists.sourceforge.net/lists/listinfo/ergatis-users |
What entries do you have in your sudoers file to support this? There is documentation about this above the sudo_pipeline_execution parameter setting in the ergatis.ini file. Joshua On Mon, Feb 13, 2012 at 11:10 AM, Mariette <[hidden email]> wrote:
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Hi Joshua, sorry we fixed our problem. The command we passed in the sudoers file to allow apache to sudo the command was wrong. tyhanks, Jerome Le 15/02/2012 17:58, Joshua Orvis a écrit :
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