program for filtering and trimming data

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program for filtering and trimming data

Joanne Rampersad
Hi
Is there an stand alone ( ie not a component of Bowtie etc ) program
in galaxy  that can filter or trim fastq data?

thanks
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Re: program for filtering and trimming data

Anton Nekrutenko
Joanne:

Look under "NGS: QC and manipulation".

Thanks,

anton

Anton Nekrutenko
http://nekrut.bx.psu.edu
http://usegalaxy.org



On Jun 10, 2011, at 1:10 PM, Joanne Rampersad wrote:

Hi
Is there an stand alone ( ie not a component of Bowtie etc ) program
in galaxy  that can filter or trim fastq data?

thanks
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

 http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

 http://lists.bx.psu.edu/

___________________________________________________________
The Galaxy User list should be used for the discussion of
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Re: program for filtering and trimming data

Ido Tamir
In reply to this post by Joanne Rampersad

On Jun 10, 2011, at 7:10 PM, Joanne Rampersad wrote:

> Hi
> Is there an stand alone ( ie not a component of Bowtie etc ) program
> in galaxy  that can filter or trim fastq data?

its under NGS TOOLBOX BETA
NGS: QC and manipulation

best,
ido
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