question on sharing databases between mines
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I want to use existing intermine and userprofile databases with a new mine. I'm getting an "unable to construct query: Not Found" when I try to query anything in the new mine
I have taken these steps:
The old mine still works fine, DBs are not the issue. Have I missed any steps?
Thanks! -JD _______________________________________________ dev mailing list [hidden email] http://mail.intermine.org/cgi-bin/mailman/listinfo/dev |
Re: question on sharing databases between mines
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You shouldn't have any problem sharing databases between webapps. Your steps
worked for me. Maybe you have a typo somewhere or something similar? 1. make sure your dbs are accessible to new webapp, eg. using machine name instead of "localhost" if you are on a different machine 2. "webapp.path" matches what the ant output says eg: release-webapp: [tomcat-deploy] OK - Deployed application at context path /preview If you look over your files and can't figure it out, try to start over again? 1. make a new mine 2. cp flybasemine.properties to testmine.properties (don't change path yet!) 3. release webapp in new mine directory testmine/webapp $ ant default remove-webapp release-webapp This way (since we haven't changed anything) we know there aren't any typos! Let me know what you find. On 09/07/12 23:04, JD Wong wrote: > I want to use existing intermine and userprofile databases with a new mine. > I'm getting an "unable to construct query: Not Found" when I try to query > anything in the new mine > > I have taken these steps: > > - made a new mine using /bio/scripts/make_mine > - copy .intermine/mine.properties file from old mine, change webapp path > - reference .properties file in new mine project.xml > - build webapp in new mine directory. > > The old mine still works fine, DBs are not the issue. Have I missed any > steps? > > Thanks! > -JD > > > > > _______________________________________________ > dev mailing list > [hidden email] > http://mail.intermine.org/cgi-bin/mailman/listinfo/dev _______________________________________________ dev mailing list [hidden email] http://mail.intermine.org/cgi-bin/mailman/listinfo/dev |
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Hi Julie, I followed those steps but I still cannot query objects. Browsing the data model lists the number of object of each type as it should, but I get the same error as before. Not sure what it could be, maybe outdated software.
Cheers, -JD
On Tue, Jul 10, 2012 at 10:32 AM, Julie Sullivan <[hidden email]> wrote: You shouldn't have any problem sharing databases between webapps. Your steps worked for me. Maybe you have a typo somewhere or something similar? _______________________________________________ dev mailing list [hidden email] http://mail.intermine.org/cgi-bin/mailman/listinfo/dev |
Re: question on sharing databases between mines
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Can you send me the full error message?
On 10/07/12 21:40, JD Wong wrote: > Hi Julie, I followed those steps but I still cannot query objects. > Browsing the data model lists the number of object of each type as it > should, but I get the same error as before. Not sure what it could be, > maybe outdated software. > > Cheers, > -JD > > On Tue, Jul 10, 2012 at 10:32 AM, Julie Sullivan<[hidden email]> wrote: > >> You shouldn't have any problem sharing databases between webapps. Your >> steps worked for me. Maybe you have a typo somewhere or something similar? >> >> 1. make sure your dbs are accessible to new webapp, eg. using machine name >> instead of "localhost" if you are on a different machine >> 2. "webapp.path" matches what the ant output says eg: >> >> release-webapp: >> [tomcat-deploy] OK - Deployed application at context path /preview >> >> If you look over your files and can't figure it out, try to start over >> again? >> >> 1. make a new mine >> 2. cp flybasemine.properties to testmine.properties (don't change path >> yet!) >> 3. release webapp in new mine directory >> >> testmine/webapp $ ant default remove-webapp release-webapp >> >> This way (since we haven't changed anything) we know there aren't any >> typos! >> >> Let me know what you find. >> >> >> >> On 09/07/12 23:04, JD Wong wrote: >> >>> I want to use existing intermine and userprofile databases with a new >>> mine. >>> I'm getting an "unable to construct query: Not Found" when I try to >>> query >>> anything in the new mine >>> >>> I have taken these steps: >>> >>> - made a new mine using /bio/scripts/make_mine >>> - copy .intermine/mine.properties file from old mine, change webapp >>> path >>> - reference .properties file in new mine project.xml >>> - build webapp in new mine directory. >>> >>> >>> The old mine still works fine, DBs are not the issue. Have I missed any >>> steps? >>> >>> Thanks! >>> -JD >>> >>> >>> >>> >>> ______________________________**_________________ >>> dev mailing list >>> [hidden email] >>> http://mail.intermine.org/cgi-**bin/mailman/listinfo/dev<http://mail.intermine.org/cgi-bin/mailman/listinfo/dev> >>> >> > _______________________________________________ dev mailing list [hidden email] http://mail.intermine.org/cgi-bin/mailman/listinfo/dev |
Re: question on sharing databases between mines
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In reply to this post by JD Wong
Hi JD!
I think I found the problem. The web service now uses these parameters to run queries: webapp.deploy.url webapp.baseurl Can you make sure those are not set to localhost? If they are, update to be the machine name and re-release your webapp. Let me know if that doesn't fix your problem. Cheers Julie On 09/07/12 23:04, JD Wong wrote: > I want to use existing intermine and userprofile databases with a new mine. > I'm getting an "unable to construct query: Not Found" when I try to query > anything in the new mine > > I have taken these steps: > > - made a new mine using /bio/scripts/make_mine > - copy .intermine/mine.properties file from old mine, change webapp path > - reference .properties file in new mine project.xml > - build webapp in new mine directory. > > The old mine still works fine, DBs are not the issue. Have I missed any > steps? > > Thanks! > -JD > > > > > _______________________________________________ > dev mailing list > [hidden email] > http://mail.intermine.org/cgi-bin/mailman/listinfo/dev _______________________________________________ dev mailing list [hidden email] http://mail.intermine.org/cgi-bin/mailman/listinfo/dev |
Re: question on sharing databases between mines
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webapp.deploy.url can still safely be set to localhost - that is just
so ant knows where to put the webapp. The important one is the webapp.baseurl one, which is the webapps own idea of its location. Alex On Wed 11 Jul 2012 14:14:50 BST, Julie Sullivan wrote: > Hi JD! > > I think I found the problem. The web service now uses these > parameters to run queries: > > webapp.deploy.url > webapp.baseurl > > Can you make sure those are not set to localhost? If they are, update > to be the machine name and re-release your webapp. Let me know if > that doesn't fix your problem. > > Cheers > Julie > > On 09/07/12 23:04, JD Wong wrote: >> I want to use existing intermine and userprofile databases with a new >> mine. >> I'm getting an "unable to construct query: Not Found" when I try to >> query >> anything in the new mine >> >> I have taken these steps: >> >> - made a new mine using /bio/scripts/make_mine >> - copy .intermine/mine.properties file from old mine, change >> webapp path >> - reference .properties file in new mine project.xml >> - build webapp in new mine directory. >> >> The old mine still works fine, DBs are not the issue. Have I missed any >> steps? >> >> Thanks! >> -JD >> >> >> >> >> _______________________________________________ >> dev mailing list >> [hidden email] >> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev > > _______________________________________________ > dev mailing list > [hidden email] > http://mail.intermine.org/cgi-bin/mailman/listinfo/dev _______________________________________________ dev mailing list [hidden email] http://mail.intermine.org/cgi-bin/mailman/listinfo/dev |
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This properties file is a copy of the one used for my version 0.99 mine which works. deploy.url is set to localhost, and baseurl is the machine name. Setting deploy.url to machine name produces the same error.
Cheers, -JD
On Wed, Jul 11, 2012 at 9:24 AM, Alex Kalderimis <[hidden email]> wrote: webapp.deploy.url can still safely be set to localhost - that is just _______________________________________________ dev mailing list [hidden email] http://mail.intermine.org/cgi-bin/mailman/listinfo/dev |
Re: question on sharing databases between mines
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Then I'm not sure what's going on. Since the error isn't in your tomcat
logs, I'm guessing it's a JavaScript error. Does an error show up on the console in your browser? > This properties file is a copy of the one used for my version 0.99 mine > which works. deploy.url is set to localhost, and baseurl is the machine > name. Setting deploy.url to machine name produces the same error. > > Cheers, > -JD > > On Wed, Jul 11, 2012 at 9:24 AM, Alex Kalderimis <[hidden email]> > wrote: > >> webapp.deploy.url can still safely be set to localhost - that is just >> so ant knows where to put the webapp. The important one is the >> webapp.baseurl one, which is the webapps own idea of its location. >> >> Alex >> >> On Wed 11 Jul 2012 14:14:50 BST, Julie Sullivan wrote: >> > Hi JD! >> > >> > I think I found the problem. The web service now uses these >> > parameters to run queries: >> > >> > webapp.deploy.url >> > webapp.baseurl >> > >> > Can you make sure those are not set to localhost? If they are, update >> > to be the machine name and re-release your webapp. Let me know if >> > that doesn't fix your problem. >> > >> > Cheers >> > Julie >> > >> > On 09/07/12 23:04, JD Wong wrote: >> >> I want to use existing intermine and userprofile databases with a new >> >> mine. >> >> I'm getting an "unable to construct query: Not Found" when I try to >> >> query >> >> anything in the new mine >> >> >> >> I have taken these steps: >> >> >> >> - made a new mine using /bio/scripts/make_mine >> >> - copy .intermine/mine.properties file from old mine, change >> >> webapp path >> >> - reference .properties file in new mine project.xml >> >> - build webapp in new mine directory. >> >> >> >> The old mine still works fine, DBs are not the issue. Have I missed >> any >> >> steps? >> >> >> >> Thanks! >> >> -JD >> >> >> >> >> >> >> >> >> >> _______________________________________________ >> >> dev mailing list >> >> [hidden email] >> >> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev >> > >> > _______________________________________________ >> > dev mailing list >> > [hidden email] >> > http://mail.intermine.org/cgi-bin/mailman/listinfo/dev >> > _______________________________________________ dev mailing list [hidden email] http://mail.intermine.org/cgi-bin/mailman/listinfo/dev |
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Yes it does:
ƒ InterMine JavaScript Library loaded intermine.js:1
Object
Failed to load resource: the server responded with a status of 404 (Not Found) http://nutria.bio.indiana.edu:8080/flybasemine_test/flybasemine_test/service/model?token=R1k3l847J6x9T9m45fz1NfZ3IuY&format=json
Object
error imjs.js:943
On Wed, Jul 11, 2012 at 12:07 PM, <[hidden email]> wrote: Then I'm not sure what's going on. Since the error isn't in your tomcat _______________________________________________ dev mailing list [hidden email] http://mail.intermine.org/cgi-bin/mailman/listinfo/dev |
Re: question on sharing databases between mines
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/flybasemine_test is being repeated twice in the URL, is that on purpose?
Radek On Wed, Jul 11, 2012 at 6:04 PM, JD Wong <[hidden email]> wrote: > Yes it does: > > ƒ InterMine JavaScript Library loaded intermine.js:1 > Object > > pageSize: 25 > __proto__: Object > > imtables.js:4766 > Failed to load resource: the server responded with a status of 404 (Not > Found) > http://nutria.bio.indiana.edu:8080/flybasemine_test/flybasemine_test/service/model?token=R1k3l847J6x9T9m45fz1NfZ3IuY&format=json > Object > > abort: function > (statusText){statusText=statusText||"abort";if(transport){transport.abort(statusText);}done(0,statusText);return > this;} > always: function (){return > deferred.done.apply(deferred,arguments).fail.apply(deferred,arguments);} > complete: function (){if(list){var > length=list.length;add(arguments);if(firing){firingLength=list.length;}else{if(memory&&memory!==true){firingStart=length;fire(memory[0],memory[1]);}}}return > this;} > done: function (){if(list){var > length=list.length;add(arguments);if(firing){firingLength=list.length;}else{if(memory&&memory!==true){firingStart=length;fire(memory[0],memory[1]);}}}return > this;} > error: function (){if(list){var > length=list.length;add(arguments);if(firing){firingLength=list.length;}else{if(memory&&memory!==true){firingStart=length;fire(memory[0],memory[1]);}}}return > this;} > fail: function (){if(list){var > length=list.length;add(arguments);if(firing){firingLength=list.length;}else{if(memory&&memory!==true){firingStart=length;fire(memory[0],memory[1]);}}}return > this;} > getAllResponseHeaders: function (){return > state===2?responseHeadersString:null;} > getResponseHeader: function (key){var > match;if(state===2){if(!responseHeaders){responseHeaders={};while((match=rheaders.exec(responseHeadersString))){responseHeaders[match[1].toLowerCase()]=match[2];}}match=responseHeaders[key.toLowerCase()];}return > match===undefined?null:match;} > isRejected: function (){return !!memory;} > isResolved: function (){return !!memory;} > overrideMimeType: function (type){if(!state){s.mimeType=type;}return this;} > pipe: function (fnDone,fnFail,fnProgress){return > jQuery.Deferred(function(newDefer){jQuery.each({done:[fnDone,"resolve"],fail:[fnFail,"reject"],progress:[fnProgress,"notify"]},function(handler,data){var > fn=data[0],action=data[1],returned;if(jQuery.isFunction(fn)){deferred[handler](function(){returned=fn.apply(this,arguments);if(returned&&jQuery.isFunction(returned.promise)){returned.promise().then(newDefer.resolve,newDefer.reject,newDefer.notify);}else{newDefer[action+"With"](this===deferred?newDefer:this,[returned]);}});}else{deferred[handler](newDefer[action]);}});}).promise();} > progress: function (){if(list){var > length=list.length;add(arguments);if(firing){firingLength=list.length;}else{if(memory&&memory!==true){firingStart=length;fire(memory[0],memory[1]);}}}return > this;} > promise: function (obj){if(obj==null){obj=promise;}else{for(var key in > promise){obj[key]=promise[key];}}return obj;} > readyState: 4 > responseText: "<?xml version="1.0" encoding="UTF-8"?>↵<!DOCTYPE html PUBLIC > "-//W3C//DTD XHTML 1.0 Transitional//EN" > "http://www.w3.org/TR/xhtml1/DTD/xhtml1-1-transitional.dtd">↵↵<!-- > layout.jsp -->↵<html xmlns="http://www.w3.org/1999/xhtml" lang="en-US" > xml:lang="en-US"><head>↵↵<!-- for google webmaster -->↵<meta > name="google-site-verification" content="" />↵↵<!-- for yahoo -->↵<META > name="y_key" content="" />↵↵<!-- for microsoft -->↵<meta > name="msvalidate.01" content="" />↵↵<META NAME="ROBOTS" > CONTENT="NOFOLLOW"/>↵ <!-- htmlHead.jsp -->↵↵<script > src="http://mistok.herokuapp.com/js/mistok.js"></script>↵<script>↵ > Mistok.key = '46c1-aa06-2d17';↵ Mistok.server = > 'http://mistok.herokuapp.com';↵</script>↵↵<link href="" rel="alternate" > type="application/rss+xml" title="FlyBaseMine | News" />↵↵<link > rel="stylesheet" type="text/css" > href="/flybasemine_test/css/webapp.css"/>↵<link rel="stylesheet" > type="text/css" href="/flybasemine_test/css/inlineTagEditor.css"/>↵<link > rel="stylesheet" type="text/css" > href="/flybasemine_test/css/resultstables.css" />↵↵<script > type="text/javascript" > src="/flybasemine_test/js/jquery-1.7.js"></script>↵<script > type="text/javascript" > src="/flybasemine_test/js/intermine.js"></script>↵↵<!--↵ ↵-->↵↵ <script > type="text/javascript">↵ jQuery.noConflict();↵ </script>↵↵ <script > type="text/javascript" src="/flybasemine_test/js/prototype.js"></script>↵ > <script type="text/javascript" > src="/flybasemine_test/dwr/interface/AjaxServices.js"></script>↵ <script > type="text/javascript" > src="/flybasemine_test/dwr/interface/TrackAjaxServices.js"></script>↵ > <script type="text/javascript" > src="/flybasemine_test/dwr/engine.js"></script>↵ <script > type="text/javascript" src="/flybasemine_test/dwr/util.js"></script>↵ > <script type="text/javascript" > src="/flybasemine_test/js/imdwr.js"></script>↵ <script > type="text/javascript" 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Try...</p>↵ <ul>↵ <li>going to > the home page</li>↵ <li>using the quicksearch</li>↵ <li>or Contact us at > support [at] flymine.org</li>↵ </ul>↵</div>↵<img border="0" > src="model/images/progress1.gif" title="Sorry..."/>↵↵<!-- /pagenotfound.jsp > -->↵<script type="text/javascript">↵jQuery(document).ready(function() {↵ > jQuery("p#contactUsLink").toggle();↵ });↵↵$MODEL_TRANSLATION_TABLE = {↵ ↵ > "DataSource": {↵ displayName: "Data Source",↵ fields: {↵ ↵ "name": "Name",↵ > "description": "Description",↵ "url": "URL",↵ "dataSets": "Data Sets",↵ > "id": "Id"↵ }↵ },↵ "ChromosomalDuplication": {↵ displayName: "Chromosomal > Duplication",↵ fields: {↵ ↵ "sequenceOntologyTerm": "Sequence Ontology > Term",↵ "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "ReversePrimer": {↵ displayName: "Reverse Primer",↵ fields: {↵ > ↵ "featureType": "Feature Type",↵ "cytology": "Cytology",↵ > "annotationSymbol": "Annotation Symbol",↵ "length": "Length",↵ > "recombinationMap": "Recombination Map",↵ "scoreType": "Score Type",↵ > "score": "Score",↵ "chromosome": "Chromosome",↵ "chromosomeLocation": > "Chromosome Location",↵ "sequence": "Sequence",↵ "sequenceOntologyTerm": > "Sequence Ontology Term",↵ "overlappingFeatures": "Overlapping Features",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "IntergenicRegion": {↵ displayName: "Intergenic Region",↵ > fields: {↵ ↵ "adjacentGenes": "Adjacent Genes",↵ "featureType": "Feature > Type",↵ "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ > "length": "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": > "Score Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "OntologyTerm": {↵ displayName: "Ontology > Term",↵ fields: {↵ ↵ "identifier": "Identifier",↵ "obsolete": "Obsolete",↵ > "namespace": "Namespace",↵ "name": "Name",↵ "description": "Description",↵ > "ontology": "Ontology",↵ "relations": "Relations",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "parents": "Parents",↵ > "dataSets": "Data Sets",↵ "id": "Id"↵ }↵ },↵ "SnoRNA": {↵ displayName: > "snoRNA",↵ fields: {↵ ↵ "evidenceScore": "Evidence Score",↵ "evidenceRank": > "Evidence Rank",↵ "protein": "Protein",↵ "gene": "Gene",↵ "introns": > "Introns",↵ "exons": "Exons",↵ "UTRs": "UTRs",↵ "CDSs": "CDSs",↵ > "featureType": "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": > "Annotation Symbol",↵ "length": "Length",↵ "recombinationMap": > "Recombination Map",↵ "scoreType": "Score Type",↵ "score": "Score",↵ > "chromosome": "Chromosome",↵ "chromosomeLocation": "Chromosome Location",↵ > "sequence": "Sequence",↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "overlappingFeatures": "Overlapping Features",↵ "secondaryIdentifier": > "Secondary Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB > identifier",↵ "name": "Name",↵ "organism": "Organism",↵ "publications": > "Publications",↵ "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology > Annotations",↵ "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ > "dataSets": "Data Sets",↵ "locatedFeatures": "Located Features",↵ > "locations": "Locations",↵ "id": "Id"↵ }↵ },↵ "Exon": {↵ displayName: > "Exon",↵ fields: {↵ ↵ "gene": "Gene",↵ "transcripts": "Transcripts",↵ > "featureType": "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": > "Annotation Symbol",↵ "length": "Length",↵ "recombinationMap": > "Recombination Map",↵ "scoreType": "Score Type",↵ "score": "Score",↵ > "chromosome": "Chromosome",↵ "chromosomeLocation": "Chromosome Location",↵ > "sequence": "Sequence",↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "overlappingFeatures": "Overlapping Features",↵ "secondaryIdentifier": > "Secondary Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB > identifier",↵ "name": "Name",↵ "organism": "Organism",↵ "publications": > "Publications",↵ "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology > Annotations",↵ "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ > "dataSets": "Data Sets",↵ "locatedFeatures": "Located Features",↵ > "locations": "Locations",↵ "id": "Id"↵ }↵ },↵ "MiRNA": {↵ displayName: > "miRNA",↵ fields: {↵ ↵ "evidenceScore": "Evidence Score",↵ "evidenceRank": > "Evidence Rank",↵ "protein": "Protein",↵ "gene": "Gene",↵ "introns": > "Introns",↵ "exons": "Exons",↵ "UTRs": "UTRs",↵ "CDSs": "CDSs",↵ > "featureType": "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": > "Annotation Symbol",↵ "length": "Length",↵ "recombinationMap": > "Recombination Map",↵ "scoreType": "Score Type",↵ "score": "Score",↵ > "chromosome": "Chromosome",↵ "chromosomeLocation": "Chromosome Location",↵ > "sequence": "Sequence",↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "overlappingFeatures": "Overlapping Features",↵ "secondaryIdentifier": > "Secondary Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB > identifier",↵ "name": "Name",↵ "organism": "Organism",↵ "publications": > "Publications",↵ "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology > Annotations",↵ "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ > "dataSets": "Data Sets",↵ "locatedFeatures": "Located Features",↵ > "locations": "Locations",↵ "id": "Id"↵ }↵ },↵ "NaturalTransposableElement": > {↵ displayName: "Natural Transposable Element",↵ fields: {↵ ↵ "featureType": > "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": "Annotation > Symbol",↵ "length": "Length",↵ "recombinationMap": "Recombination Map",↵ > "scoreType": "Score Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "CRM": {↵ displayName: "CRM",↵ fields: {↵ ↵ > "TFBindingSites": "TF Binding Sites",↵ "gene": "Gene",↵ "featureType": > "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": "Annotation > Symbol",↵ "length": "Length",↵ "recombinationMap": "Recombination Map",↵ > "scoreType": "Score Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "NcRNA": {↵ displayName: "ncRNA",↵ fields: > {↵ ↵ "evidenceScore": "Evidence Score",↵ "evidenceRank": "Evidence Rank",↵ > "protein": "Protein",↵ "gene": "Gene",↵ "introns": "Introns",↵ "exons": > "Exons",↵ "UTRs": "UTRs",↵ "CDSs": "CDSs",↵ "featureType": "Feature Type",↵ > "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ "length": > "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": "Score > Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "Oligo": {↵ displayName: "Oligo",↵ fields: > {↵ ↵ "featureType": "Feature Type",↵ "cytology": "Cytology",↵ > "annotationSymbol": "Annotation Symbol",↵ "length": "Length",↵ > "recombinationMap": "Recombination Map",↵ "scoreType": "Score Type",↵ > "score": "Score",↵ "chromosome": "Chromosome",↵ "chromosomeLocation": > "Chromosome Location",↵ "sequence": "Sequence",↵ "sequenceOntologyTerm": > "Sequence Ontology Term",↵ "overlappingFeatures": "Overlapping Features",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "EST": {↵ displayName: "EST",↵ fields: {↵ ↵ > "overlappingESTSets": "Overlapping EST Sets",↵ "featureType": "Feature > Type",↵ "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ > "length": "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": > "Score Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "Primer": {↵ displayName: "Primer",↵ > fields: {↵ ↵ "featureType": "Feature Type",↵ "cytology": "Cytology",↵ > "annotationSymbol": "Annotation Symbol",↵ "length": "Length",↵ > "recombinationMap": "Recombination Map",↵ "scoreType": "Score Type",↵ > "score": "Score",↵ "chromosome": "Chromosome",↵ "chromosomeLocation": > "Chromosome Location",↵ "sequence": "Sequence",↵ "sequenceOntologyTerm": > "Sequence Ontology Term",↵ "overlappingFeatures": "Overlapping Features",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "ChromosomalTranslocation": {↵ displayName: "Chromosomal > Translocation",↵ fields: {↵ ↵ "sequenceOntologyTerm": "Sequence Ontology > Term",↵ "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "SequenceFeature": {↵ displayName: "Sequence Feature",↵ fields: > {↵ ↵ "featureType": "Feature Type",↵ "cytology": "Cytology",↵ > "annotationSymbol": "Annotation Symbol",↵ "length": "Length",↵ > "recombinationMap": "Recombination Map",↵ "scoreType": "Score Type",↵ > "score": "Score",↵ "chromosome": "Chromosome",↵ "chromosomeLocation": > "Chromosome Location",↵ "sequence": "Sequence",↵ "sequenceOntologyTerm": > "Sequence Ontology Term",↵ "overlappingFeatures": "Overlapping Features",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "MobileGeneticElement": {↵ displayName: "Mobile Genetic > Element",↵ fields: {↵ ↵ "featureType": "Feature Type",↵ "cytology": > "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ "length": "Length",↵ > "recombinationMap": "Recombination Map",↵ "scoreType": "Score Type",↵ > "score": "Score",↵ "chromosome": "Chromosome",↵ "chromosomeLocation": > "Chromosome Location",↵ "sequence": "Sequence",↵ "sequenceOntologyTerm": > "Sequence Ontology Term",↵ "overlappingFeatures": "Overlapping Features",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "Enhancer": {↵ displayName: "Enhancer",↵ fields: {↵ ↵ > "TFBindingSites": "TF Binding Sites",↵ "gene": "Gene",↵ "featureType": > "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": "Annotation > Symbol",↵ "length": "Length",↵ "recombinationMap": "Recombination Map",↵ > "scoreType": "Score Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "RRNA": {↵ displayName: "rRNA",↵ fields: {↵ > ↵ "evidenceScore": "Evidence Score",↵ "evidenceRank": "Evidence Rank",↵ > "protein": "Protein",↵ "gene": "Gene",↵ "introns": "Introns",↵ "exons": > "Exons",↵ "UTRs": "UTRs",↵ "CDSs": "CDSs",↵ "featureType": "Feature Type",↵ > "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ "length": > "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": "Score > Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "ChromosomalInversion": {↵ displayName: > "Chromosomal Inversion",↵ fields: {↵ ↵ "sequenceOntologyTerm": "Sequence > Ontology Term",↵ "secondaryIdentifier": "Secondary Identifier",↵ "symbol": > "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "DataSet": {↵ displayName: "Data Set",↵ > fields: {↵ ↵ "name": "Name",↵ "version": "Version",↵ "description": > "Description",↵ "url": "URL",↵ "dataSource": "Data Source",↵ "bioEntities": > "Bio Entities",↵ "id": "Id"↵ }↵ },↵ "Clone": {↵ displayName: "Clone",↵ > fields: {↵ ↵ "genes": "Genes",↵ "featureType": "Feature Type",↵ "cytology": > "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ "length": "Length",↵ > "recombinationMap": "Recombination Map",↵ "scoreType": "Score Type",↵ > "score": "Score",↵ "chromosome": "Chromosome",↵ "chromosomeLocation": > "Chromosome Location",↵ "sequence": "Sequence",↵ "sequenceOntologyTerm": > "Sequence Ontology Term",↵ "overlappingFeatures": "Overlapping Features",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "Sequence": {↵ displayName: "Sequence",↵ fields: {↵ ↵ > "md5checksum": "MD5 Checksum",↵ "length": "Length",↵ "residues": > "Residues",↵ "id": "Id"↵ }↵ },↵ "OntologyTermSynonym": {↵ displayName: > "Ontology Term Synonym",↵ fields: {↵ ↵ "type": "Type",↵ "name": "Name",↵ > "id": "Id"↵ }↵ },↵ "ForwardPrimer": {↵ displayName: "Forward Primer",↵ > fields: {↵ ↵ "featureType": "Feature Type",↵ "cytology": "Cytology",↵ > "annotationSymbol": "Annotation Symbol",↵ "length": "Length",↵ > "recombinationMap": "Recombination Map",↵ "scoreType": "Score Type",↵ > "score": "Score",↵ "chromosome": "Chromosome",↵ "chromosomeLocation": > "Chromosome Location",↵ "sequence": "Sequence",↵ "sequenceOntologyTerm": > "Sequence Ontology Term",↵ "overlappingFeatures": "Overlapping Features",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "PCRProduct": {↵ displayName: "PCR Product",↵ fields: {↵ ↵ > "featureType": "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": > "Annotation Symbol",↵ "length": "Length",↵ "recombinationMap": > "Recombination Map",↵ "scoreType": "Score Type",↵ "score": "Score",↵ > "chromosome": "Chromosome",↵ "chromosomeLocation": "Chromosome Location",↵ > "sequence": "Sequence",↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "overlappingFeatures": "Overlapping Features",↵ "secondaryIdentifier": > "Secondary Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB > identifier",↵ "name": "Name",↵ "organism": "Organism",↵ "publications": > "Publications",↵ "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology > Annotations",↵ "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ > "dataSets": "Data Sets",↵ "locatedFeatures": "Located Features",↵ > "locations": "Locations",↵ "id": "Id"↵ }↵ },↵ "Stock": {↵ displayName: > "Stock",↵ fields: {↵ ↵ "collectionType": "Collection Type",↵ "stockCenter": > "Stock Center",↵ "genotype": "Genotype",↵ "stockNumber": "Stock Number",↵ > "bioentities": "Bioentities",↵ "secondaryIdentifier": "Secondary > Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ > "name": "Name",↵ "organism": "Organism",↵ "publications": "Publications",↵ > "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "MicroarrayOligo": {↵ displayName: > "Microarray Oligo",↵ fields: {↵ ↵ "featureType": "Feature Type",↵ > "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ "length": > "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": "Score > Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "TRNA": {↵ displayName: "tRNA",↵ fields: {↵ > ↵ "evidenceScore": "Evidence Score",↵ "evidenceRank": "Evidence Rank",↵ > "protein": "Protein",↵ "gene": "Gene",↵ "introns": "Introns",↵ "exons": > "Exons",↵ "UTRs": "UTRs",↵ "CDSs": "CDSs",↵ "featureType": "Feature Type",↵ > "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ "length": > "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": "Score > Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "SOTerm": {↵ displayName: "SO Term",↵ > fields: {↵ ↵ "identifier": "Identifier",↵ "obsolete": "Obsolete",↵ > "namespace": "Namespace",↵ "name": "Name",↵ "description": "Description",↵ > "ontology": "Ontology",↵ "relations": "Relations",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "parents": "Parents",↵ > "dataSets": "Data Sets",↵ "id": "Id"↵ }↵ },↵ "MRNA": {↵ displayName: > "mRNA",↵ fields: {↵ ↵ "evidenceScore": "Evidence Score",↵ "evidenceRank": > "Evidence Rank",↵ "protein": "Protein",↵ "gene": "Gene",↵ "introns": > "Introns",↵ "exons": "Exons",↵ "UTRs": "UTRs",↵ "CDSs": "CDSs",↵ > "featureType": "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": > "Annotation Symbol",↵ "length": "Length",↵ "recombinationMap": > "Recombination Map",↵ "scoreType": "Score Type",↵ "score": "Score",↵ > "chromosome": "Chromosome",↵ "chromosomeLocation": "Chromosome Location",↵ > "sequence": "Sequence",↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "overlappingFeatures": "Overlapping Features",↵ "secondaryIdentifier": > "Secondary Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB > identifier",↵ "name": "Name",↵ "organism": "Organism",↵ "publications": > "Publications",↵ "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology > Annotations",↵ "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ > "dataSets": "Data Sets",↵ "locatedFeatures": "Located Features",↵ > "locations": "Locations",↵ "id": "Id"↵ }↵ },↵ "Comment": {↵ displayName: > "Comment",↵ fields: {↵ ↵ "type": "Type",↵ "text": "Text",↵ "id": "Id"↵ }↵ > },↵ "ChromosomeStructureVariation": {↵ displayName: "Chromosome Structure > Variation",↵ fields: {↵ ↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "RegulatoryRegion": {↵ displayName: "Regulatory Region",↵ > fields: {↵ ↵ "gene": "Gene",↵ "featureType": "Feature Type",↵ "cytology": > "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ "length": "Length",↵ > "recombinationMap": "Recombination Map",↵ "scoreType": "Score Type",↵ > "score": "Score",↵ "chromosome": "Chromosome",↵ "chromosomeLocation": > "Chromosome Location",↵ "sequence": "Sequence",↵ "sequenceOntologyTerm": > "Sequence Ontology Term",↵ "overlappingFeatures": "Overlapping Features",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "TransposableElementInsertionSite": {↵ displayName: > "Transposable Element Insertion Site",↵ fields: {↵ ↵ "featureType": "Feature > Type",↵ "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ > "length": "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": > "Score Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "UTR": {↵ displayName: "UTR",↵ fields: {↵ ↵ > "gene": "Gene",↵ "transcripts": "Transcripts",↵ "featureType": "Feature > Type",↵ "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ > "length": "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": > "Score Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "Allele": {↵ displayName: "Allele",↵ > fields: {↵ ↵ "gene": "Gene",↵ "sequenceOntologyTerm": "Sequence Ontology > Term",↵ "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "ChromosomalDeletion": {↵ displayName: "Chromosomal Deletion",↵ > fields: {↵ ↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "OverlappingESTSet": {↵ displayName: "Overlapping EST Set",↵ > fields: {↵ ↵ "ESTs": "ES Ts",↵ "featureType": "Feature Type",↵ "cytology": > "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ "length": "Length",↵ > "recombinationMap": "Recombination Map",↵ "scoreType": "Score Type",↵ > "score": "Score",↵ "chromosome": "Chromosome",↵ "chromosomeLocation": > "Chromosome Location",↵ "sequence": "Sequence",↵ "sequenceOntologyTerm": > "Sequence Ontology Term",↵ "overlappingFeatures": "Overlapping Features",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "Synonym": {↵ displayName: "Synonym",↵ fields: {↵ ↵ "value": > "Value",↵ "subject": "Subject",↵ "dataSets": "Data Sets",↵ "id": "Id"↵ }↵ > },↵ "PointMutation": {↵ displayName: "Point Mutation",↵ fields: {↵ ↵ > "featureType": "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": > "Annotation Symbol",↵ "length": "Length",↵ "recombinationMap": > "Recombination Map",↵ "scoreType": "Score Type",↵ "score": "Score",↵ > "chromosome": "Chromosome",↵ "chromosomeLocation": "Chromosome Location",↵ > "sequence": "Sequence",↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "overlappingFeatures": "Overlapping Features",↵ "secondaryIdentifier": > "Secondary Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB > identifier",↵ "name": "Name",↵ "organism": "Organism",↵ "publications": > "Publications",↵ "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology > Annotations",↵ "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ > "dataSets": "Data Sets",↵ "locatedFeatures": "Located Features",↵ > "locations": "Locations",↵ "id": "Id"↵ }↵ },↵ "GeneFlankingRegion": {↵ > displayName: "Gene Flanking Region",↵ fields: {↵ ↵ "distance": "Distance",↵ > "includeGene": "Include Gene",↵ "direction": "Direction",↵ "gene": "Gene",↵ > "featureType": "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": > "Annotation Symbol",↵ "length": "Length",↵ "recombinationMap": > "Recombination Map",↵ "scoreType": "Score Type",↵ "score": "Score",↵ > "chromosome": "Chromosome",↵ "chromosomeLocation": "Chromosome Location",↵ > "sequence": "Sequence",↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "overlappingFeatures": "Overlapping Features",↵ "secondaryIdentifier": > "Secondary Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB > identifier",↵ "name": "Name",↵ "organism": "Organism",↵ "publications": > "Publications",↵ "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology > Annotations",↵ "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ > "dataSets": "Data Sets",↵ "locatedFeatures": "Located Features",↵ > "locations": "Locations",↵ "id": "Id"↵ }↵ },↵ "TransposableElement": {↵ > displayName: "Transposable Element",↵ fields: {↵ ↵ "featureType": "Feature > Type",↵ "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ > "length": "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": > "Score Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "ThreePrimeUTR": {↵ displayName: "Three > Prime UTR",↵ fields: {↵ ↵ "gene": "Gene",↵ "transcripts": "Transcripts",↵ > "featureType": "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": > "Annotation Symbol",↵ "length": "Length",↵ "recombinationMap": > "Recombination Map",↵ "scoreType": "Score Type",↵ "score": "Score",↵ > "chromosome": "Chromosome",↵ "chromosomeLocation": "Chromosome Location",↵ > "sequence": "Sequence",↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "overlappingFeatures": "Overlapping Features",↵ "secondaryIdentifier": > "Secondary Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB > identifier",↵ "name": "Name",↵ "organism": "Organism",↵ "publications": > "Publications",↵ "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology > Annotations",↵ "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ > "dataSets": "Data Sets",↵ "locatedFeatures": "Located Features",↵ > "locations": "Locations",↵ "id": "Id"↵ }↵ },↵ "ChromosomeBand": {↵ > displayName: "Chromosome Band",↵ fields: {↵ ↵ "featureType": "Feature > Type",↵ "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ > "length": "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": > "Score Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "Organism": {↵ displayName: "Organism",↵ > fields: {↵ ↵ "shortName": "Short Name",↵ "taxonId": "Taxon Id",↵ "genus": > "Genus",↵ "commonName": "Common Name",↵ "species": "Species",↵ "name": > "Name",↵ "id": "Id"↵ }↵ },↵ "BioEntity": {↵ displayName: "Bio-Entity",↵ > fields: {↵ ↵ "secondaryIdentifier": "Secondary Identifier",↵ "symbol": > "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "Gene": {↵ displayName: "Gene",↵ fields: {↵ > ↵ "ncbiGeneNumber": "NCBI Gene Number",↵ "downstreamIntergenicRegion": > "Downstream Intergenic Region",↵ "upstreamIntergenicRegion": "Upstream > Intergenic Region",↵ "regulatoryRegions": "Regulatory Regions",↵ "proteins": > "Proteins",↵ "transcripts": "Transcripts",↵ "CDSs": "CDSs",↵ "UTRs": > "UTRs",↵ "exons": "Exons",↵ "clones": "Clones",↵ "alleles": "Alleles",↵ > "introns": "Introns",↵ "flankingRegions": "Flanking Regions",↵ > "featureType": "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": > "Annotation Symbol",↵ "length": "Length",↵ "recombinationMap": > "Recombination Map",↵ "scoreType": "Score Type",↵ "score": "Score",↵ > "chromosome": "Chromosome",↵ "chromosomeLocation": "Chromosome Location",↵ > "sequence": "Sequence",↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "overlappingFeatures": "Overlapping Features",↵ "secondaryIdentifier": > "Secondary Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB > identifier",↵ "name": "Name",↵ "organism": "Organism",↵ "publications": > "Publications",↵ "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology > Annotations",↵ "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ > "dataSets": "Data Sets",↵ "locatedFeatures": "Located Features",↵ > "locations": "Locations",↵ "id": "Id"↵ }↵ },↵ "Protein": {↵ displayName: > "Protein",↵ fields: {↵ ↵ "FlyBaseTheoreticalPi": "Fly Base Theoretical Pi",↵ > "molecularWeight": "Molecular Weight",↵ "md5checksum": "MD5 Checksum",↵ > "length": "Length",↵ "FlyBasePredictedMW": "Fly Base Predicted MW",↵ > "primaryAccession": "Primary Accession",↵ "sequence": "Sequence",↵ "CDSs": > "CDSs",↵ "genes": "Genes",↵ "transcripts": "Transcripts",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "Transcript": {↵ displayName: "Transcript",↵ fields: {↵ ↵ > "evidenceScore": "Evidence Score",↵ "evidenceRank": "Evidence Rank",↵ > "protein": "Protein",↵ "gene": "Gene",↵ "introns": "Introns",↵ "exons": > "Exons",↵ "UTRs": "UTRs",↵ "CDSs": "CDSs",↵ "featureType": "Feature Type",↵ > "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ "length": > "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": "Score > Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "Intron": {↵ displayName: "Intron",↵ > fields: {↵ ↵ "transcripts": "Transcripts",↵ "genes": "Genes",↵ > "featureType": "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": > "Annotation Symbol",↵ "length": "Length",↵ "recombinationMap": > "Recombination Map",↵ "scoreType": "Score Type",↵ "score": "Score",↵ > "chromosome": "Chromosome",↵ "chromosomeLocation": "Chromosome Location",↵ > "sequence": "Sequence",↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "overlappingFeatures": "Overlapping Features",↵ "secondaryIdentifier": > "Secondary Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB > identifier",↵ "name": "Name",↵ "organism": "Organism",↵ "publications": > "Publications",↵ "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology > Annotations",↵ "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ > "dataSets": "Data Sets",↵ "locatedFeatures": "Located Features",↵ > "locations": "Locations",↵ "id": "Id"↵ }↵ },↵ "GoldenPathFragment": {↵ > displayName: "Golden Path Fragment",↵ fields: {↵ ↵ "featureType": "Feature > Type",↵ "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ > "length": "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": > "Score Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "CDNAClone": {↵ displayName: "cDNA Clone",↵ > fields: {↵ ↵ "featureType": "Feature Type",↵ "cytology": "Cytology",↵ > "annotationSymbol": "Annotation Symbol",↵ "length": "Length",↵ > "recombinationMap": "Recombination Map",↵ "scoreType": "Score Type",↵ > "score": "Score",↵ "chromosome": "Chromosome",↵ "chromosomeLocation": > "Chromosome Location",↵ "sequence": "Sequence",↵ "sequenceOntologyTerm": > "Sequence Ontology Term",↵ "overlappingFeatures": "Overlapping Features",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "FivePrimeUTR": {↵ displayName: "Five Prime UTR",↵ fields: {↵ ↵ > "gene": "Gene",↵ "transcripts": "Transcripts",↵ "featureType": "Feature > Type",↵ "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ > "length": "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": > "Score Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "CDS": {↵ displayName: "CDS",↵ fields: {↵ ↵ > "gene": "Gene",↵ "transcript": "Transcript",↵ "protein": "Protein",↵ > "featureType": "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": > "Annotation Symbol",↵ "length": "Length",↵ "recombinationMap": > "Recombination Map",↵ "scoreType": "Score Type",↵ "score": "Score",↵ > "chromosome": "Chromosome",↵ "chromosomeLocation": "Chromosome Location",↵ > "sequence": "Sequence",↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "overlappingFeatures": "Overlapping Features",↵ "secondaryIdentifier": > "Secondary Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB > identifier",↵ "name": "Name",↵ "organism": "Organism",↵ "publications": > "Publications",↵ "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology > Annotations",↵ "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ > "dataSets": "Data Sets",↵ "locatedFeatures": "Located Features",↵ > "locations": "Locations",↵ "id": "Id"↵ }↵ },↵ "ChromosomalTransposition": {↵ > displayName: "Chromosomal Transposition",↵ fields: {↵ ↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "secondaryIdentifier": > "Secondary Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB > identifier",↵ "name": "Name",↵ "organism": "Organism",↵ "publications": > "Publications",↵ "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology > Annotations",↵ "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ > "dataSets": "Data Sets",↵ "locatedFeatures": "Located Features",↵ > "locations": "Locations",↵ "id": "Id"↵ }↵ },↵ "OntologyAnnotation": {↵ > displayName: "Ontology Annotation",↵ fields: {↵ ↵ "qualifier": "Qualifier",↵ > "ontologyTerm": "Ontology Term",↵ "subject": "Subject",↵ "dataSets": "Data > Sets",↵ "publications": "Publications",↵ "id": "Id"↵ }↵ },↵ > "OntologyRelation": {↵ displayName: "Ontology Relation",↵ fields: {↵ ↵ > "relationship": "Relationship",↵ "redundant": "Redundant",↵ "direct": > "Direct",↵ "childTerm": "Child Term",↵ "parentTerm": "Parent Term",↵ "id": > "Id"↵ }↵ },↵ "Publication": {↵ displayName: "Publication",↵ fields: {↵ ↵ > "pages": "Pages",↵ "year": "Year",↵ "volume": "Volume",↵ "issue": "Issue",↵ > "pubMedId": "PubMed ID",↵ "journal": "Journal",↵ "title": "Title",↵ > "firstAuthor": "First Author",↵ "authors": "Authors",↵ "id": "Id"↵ }↵ },↵ > "SequenceVariant": {↵ displayName: "Sequence Variant",↵ fields: {↵ ↵ > "genes": "Genes",↵ "id": "Id"↵ }↵ },↵ "TFBindingSite": {↵ displayName: "TF > Binding Site",↵ fields: {↵ ↵ "CRM": "CRM",↵ "featureType": "Feature Type",↵ > "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ "length": > "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": "Score > Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id",↵ "gene": "Gene"↵ }↵ },↵ "CrossReference": {↵ > displayName: "Cross Reference",↵ fields: {↵ ↵ "identifier": "Identifier",↵ > "subject": "Subject",↵ "source": "Source",↵ "dataSets": "Data Sets",↵ "id": > "Id"↵ }↵ },↵ "SnRNA": {↵ displayName: "snRNA",↵ fields: {↵ ↵ > "evidenceScore": "Evidence Score",↵ "evidenceRank": "Evidence Rank",↵ > "protein": "Protein",↵ "gene": "Gene",↵ "introns": "Introns",↵ "exons": > "Exons",↵ "UTRs": "UTRs",↵ "CDSs": "CDSs",↵ "featureType": "Feature Type",↵ > "cytology": "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ "length": > "Length",↵ "recombinationMap": "Recombination Map",↵ "scoreType": "Score > Type",↵ "score": "Score",↵ "chromosome": "Chromosome",↵ > "chromosomeLocation": "Chromosome Location",↵ "sequence": "Sequence",↵ > "sequenceOntologyTerm": "Sequence Ontology Term",↵ "overlappingFeatures": > "Overlapping Features",↵ "secondaryIdentifier": "Secondary Identifier",↵ > "symbol": "Symbol",↵ "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ > "organism": "Organism",↵ "publications": "Publications",↵ "synonyms": > "Synonyms",↵ "ontologyAnnotations": "Ontology Annotations",↵ > "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ "dataSets": > "Data Sets",↵ "locatedFeatures": "Located Features",↵ "locations": > "Locations",↵ "id": "Id"↵ }↵ },↵ "Author": {↵ displayName: "Author",↵ > fields: {↵ ↵ "name": "Name",↵ "publications": "Publications",↵ "id": "Id"↵ > }↵ },↵ "SequenceCollection": {↵ displayName: "Sequence Collection",↵ fields: > {↵ ↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "Chromosome": {↵ displayName: "Chromosome",↵ fields: {↵ ↵ > "featureType": "Feature Type",↵ "cytology": "Cytology",↵ "annotationSymbol": > "Annotation Symbol",↵ "length": "Length",↵ "recombinationMap": > "Recombination Map",↵ "scoreType": "Score Type",↵ "score": "Score",↵ > "chromosome": "Chromosome",↵ "chromosomeLocation": "Chromosome Location",↵ > "sequence": "Sequence",↵ "sequenceOntologyTerm": "Sequence Ontology Term",↵ > "overlappingFeatures": "Overlapping Features",↵ "secondaryIdentifier": > "Secondary Identifier",↵ "symbol": "Symbol",↵ "primaryIdentifier": "DB > identifier",↵ "name": "Name",↵ "organism": "Organism",↵ "publications": > "Publications",↵ "synonyms": "Synonyms",↵ "ontologyAnnotations": "Ontology > Annotations",↵ "crossReferences": "Cross References",↵ "stocks": "Stocks",↵ > "dataSets": "Data Sets",↵ "locatedFeatures": "Located Features",↵ > "locations": "Locations",↵ "id": "Id"↵ }↵ },↵ "Location": {↵ displayName: > "Location",↵ fields: {↵ ↵ "start": "Start",↵ "end": "End",↵ "strand": > "Strand",↵ "feature": "Feature",↵ "locatedOn": "Located On",↵ "dataSets": > "Data Sets",↵ "id": "Id"↵ }↵ },↵ "BindingSite": {↵ displayName: "Binding > Site",↵ fields: {↵ ↵ "featureType": "Feature Type",↵ "cytology": > "Cytology",↵ "annotationSymbol": "Annotation Symbol",↵ "length": "Length",↵ > "recombinationMap": "Recombination Map",↵ "scoreType": "Score Type",↵ > "score": "Score",↵ "chromosome": "Chromosome",↵ "chromosomeLocation": > "Chromosome Location",↵ "sequence": "Sequence",↵ "sequenceOntologyTerm": > "Sequence Ontology Term",↵ "overlappingFeatures": "Overlapping Features",↵ > "secondaryIdentifier": "Secondary Identifier",↵ "symbol": "Symbol",↵ > "primaryIdentifier": "DB identifier",↵ "name": "Name",↵ "organism": > "Organism",↵ "publications": "Publications",↵ "synonyms": "Synonyms",↵ > "ontologyAnnotations": "Ontology Annotations",↵ "crossReferences": "Cross > References",↵ "stocks": "Stocks",↵ "dataSets": "Data Sets",↵ > "locatedFeatures": "Located Features",↵ "locations": "Locations",↵ "id": > "Id"↵ }↵ },↵ "Ontology": {↵ displayName: "Ontology",↵ fields: {↵ ↵ "name": > "Name",↵ "url": "URL",↵ "id": "Id"↵ }↵ },↵ "InterMineObject": {↵ > displayName: "InterMineObject",↵ fields: {↵ ↵ "id": "InterMineObject.id"↵ }↵ > }↵};↵↵</script>↵↵ <!-- errorMessages.jsp > -->↵<tiles:importAttributes/>↵<script type="text/javascript" > charset="utf-8">↵var haserrors=0;↵var haslookup=0;↵var hasmessages=0;↵var > strutsMsgSize = 0;↵↵<!-- ERRORS -->↵<!-- LOOKUP & PORTAL -->↵<!-- ERRORS II > -->↵<!-- MESSAGES -->↵<!-- MESSAGES II -->↵↵↵if(haserrors) {↵ > jQuery('#error_msg').fadeIn(2000);↵}↵if(hasmessages) {↵ > jQuery('#msg').fadeIn(2000);↵}↵if(haslookup) {↵ > jQuery('#lookup_msg').fadeIn(2000);↵}↵↵</script>↵↵↵<!-- /errorMessages.jsp > -->↵<!-- footer.jsp -->↵↵<br/><br/><br/>↵↵<div class="body" align="center" > style="clear:both">↵↵ <div id="contactFormDivButton">↵ <im:vspacer > height="11"/>↵ <div class="contactButton">↵ <a href="#" > onclick="showContactForm();return false">↵ <b>Questions? Comments? Click > here!</b>↵ </a>↵ </div>↵ </div>↵↵ <div id="contactFormDiv" > style="display:none;">↵ <im:vspacer height="11"/>↵ <!-- feedbackForm.jsp > -->↵↵↵↵↵<link rel="stylesheet" type="text/css" > href="css/contactForm.css"/>↵<div class="body">↵ <form id="contactForm" > method="post" action="/flybasemine_test/contactAction.do"><table > cellspacing="0" cellpadding="3" border="0">↵ <tr>↵ <td align="right">Your > name:</td>↵ <td>↵ <input type="text" name="name" size="40" value="" > id="fbname" /></td>↵ </tr>↵ <tr>↵ <td align="right">Your email > address:</td>↵ <td><span id="monkey"></span></td>↵ </tr>↵ <tr>↵ <td > align="right">Subject:</td>↵ <td><input type="text" name="subject" size="40" > value="" /></td>↵ </tr>↵ <tr>↵ <td align="right" valign="top">Message:</td>↵ > <td><textarea name="message" cols="80" rows="10" id="fbcomment" > style="width: 100%">↵↵↵↵---- Current page: > ----↵↵/flybasemine_test/flybasemine_test/service/model?token=R1k3l847J6x9T9m45fz1NfZ3IuY&format=json↵↵---- > Current query: ----↵↵<query name="" model="genomic" > view="Gene.primaryIdentifier" longDescription="" > sortOrder="Gene.primaryIdentifier > asc"></query></textarea></td>↵ </tr>↵ <tr>↵ <td > align="center"><input type="submit" value="Submit" /></td>↵ </tr>↵ </table>↵ > </form></div>↵↵<script > language="JavaScript">↵<!--↵jQuery('#monkey').html('<input type=\"text\" > name=\"monkey\" size=\"40\"/>');↵↵// append browser version into the message > area↵var browser = navigator.userAgent;↵jQuery("form#contactForm > textarea#fbcomment").val(jQuery("form#contactForm textarea#fbcomment").val() > + "\n\n---- Browser: ----\n\n" + browser);↵↵// JS submit handler for the > form↵jQuery("#contactForm").submit(function(e) {↵ // no synchronous beans > for you↵ e.preventDefault();↵↵ // values dict↵ var form = {};↵ form["name"] > = jQuery(this).find('input[name="name"]').val();↵ form["monkey"] = > jQuery(this).find('input[name="monkey"]').val();↵ form["subject"] = > jQuery(this).find('input[name="subject"]').val();↵ form["message"] = > jQuery(this).find('textarea[name="message"]').val();↵↵ // send the form > through AJAX↵ jQuery.post(jQuery(this).attr('action'), form,↵ function > (data) {↵ // show the response message↵ > jQuery("#contactForm").parent().prepend(jQuery(data).find("#contactFormResponse").clone());↵ > jQuery("#contactFormResponse").show();↵ ↵ // hide the form again (what a > mess...)↵ if (jQuery("#contactFormResponse > #error_msg.topBar.messages").exists()) {↵ > jQuery("form#contactForm").hide();↵ }↵ }↵ );↵});↵//-->↵</script>↵↵↵<!-- > /feedbackForm.jsp -->↵</div>↵ <br/>↵<div id="funding-footer">↵ InterMine is > funded by the <a href="http://www.nih.gov/" target="_new" title="US National > Institutes of Health"><img src="images/logo_nih.gif" height="42px" > width="52px" border="0" /></a><br/><br/>↵ <p>Powered by</p>↵ <a target="new" > href="http://intermine.org" title="InterMine">↵ <img > src="images/icons/intermine-footer-logo.png" alt="InterMine logo" />↵ > </a>↵</div>↵↵</div>↵↵<!-- /footer.jsp -->↵</div>↵ </div>↵</body>↵</html><!-- > /layout.jsp -->" > setRequestHeader: function (name,value){if(!state){var > lname=name.toLowerCase();name=requestHeadersNames[lname]=requestHeadersNames[lname]||name;requestHeaders[name]=value;}return > this;} > state: function (){return state;} > status: 404 > statusCode: function (map){if(map){var tmp;if(state<2){for(tmp in > map){statusCode[tmp]=[statusCode[tmp],map[tmp]];}}else{tmp=map[jqXHR.status];jqXHR.then(tmp,tmp);}}return > this;} > statusText: "Not Found" > success: function (){if(list){var > length=list.length;add(arguments);if(firing){firingLength=list.length;}else{if(memory&&memory!==true){firingStart=length;fire(memory[0],memory[1]);}}}return > this;} > then: function > (doneCallbacks,failCallbacks,progressCallbacks){deferred.done(doneCallbacks).fail(failCallbacks).progress(progressCallbacks);return > this;} > __proto__: Object > > imjs.js:941 > error imjs.js:943 > > On Wed, Jul 11, 2012 at 12:07 PM, <[hidden email]> wrote: >> >> Then I'm not sure what's going on. Since the error isn't in your tomcat >> logs, I'm guessing it's a JavaScript error. Does an error show up on the >> console in your browser? >> >> > This properties file is a copy of the one used for my version 0.99 mine >> > which works. deploy.url is set to localhost, and baseurl is the machine >> > name. Setting deploy.url to machine name produces the same error. >> > >> > Cheers, >> > -JD >> > >> > On Wed, Jul 11, 2012 at 9:24 AM, Alex Kalderimis <[hidden email]> >> > wrote: >> > >> >> webapp.deploy.url can still safely be set to localhost - that is just >> >> so ant knows where to put the webapp. The important one is the >> >> webapp.baseurl one, which is the webapps own idea of its location. >> >> >> >> Alex >> >> >> >> On Wed 11 Jul 2012 14:14:50 BST, Julie Sullivan wrote: >> >> > Hi JD! >> >> > >> >> > I think I found the problem. The web service now uses these >> >> > parameters to run queries: >> >> > >> >> > webapp.deploy.url >> >> > webapp.baseurl >> >> > >> >> > Can you make sure those are not set to localhost? If they are, >> >> > update >> >> > to be the machine name and re-release your webapp. Let me know if >> >> > that doesn't fix your problem. >> >> > >> >> > Cheers >> >> > Julie >> >> > >> >> > On 09/07/12 23:04, JD Wong wrote: >> >> >> I want to use existing intermine and userprofile databases with a >> >> >> new >> >> >> mine. >> >> >> I'm getting an "unable to construct query: Not Found" when I try >> >> >> to >> >> >> query >> >> >> anything in the new mine >> >> >> >> >> >> I have taken these steps: >> >> >> >> >> >> - made a new mine using /bio/scripts/make_mine >> >> >> - copy .intermine/mine.properties file from old mine, change >> >> >> webapp path >> >> >> - reference .properties file in new mine project.xml >> >> >> - build webapp in new mine directory. >> >> >> >> >> >> The old mine still works fine, DBs are not the issue. Have I missed >> >> any >> >> >> steps? >> >> >> >> >> >> Thanks! >> >> >> -JD >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> _______________________________________________ >> >> >> dev mailing list >> >> >> [hidden email] >> >> >> http://mail.intermine.org/cgi-bin/mailman/listinfo/dev >> >> > >> >> > _______________________________________________ >> >> > dev mailing list >> >> > [hidden email] >> >> > http://mail.intermine.org/cgi-bin/mailman/listinfo/dev >> >> >> > >> > > > _______________________________________________ > dev mailing list > [hidden email] > http://mail.intermine.org/cgi-bin/mailman/listinfo/dev > _______________________________________________ dev mailing list [hidden email] http://mail.intermine.org/cgi-bin/mailman/listinfo/dev |
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No, it isn't. That is an invalid URL. Deleting the duplicate produces a valid page.
-JD
On Wed, Jul 11, 2012 at 1:08 PM, Radek Stepan <[hidden email]> wrote: /flybasemine_test is being repeated twice in the URL, is that on purpose? _______________________________________________ dev mailing list [hidden email] http://mail.intermine.org/cgi-bin/mailman/listinfo/dev |
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Here is the stack trace by the way:
Cheers,
-JD On Wed, Jul 11, 2012 at 2:59 PM, JD Wong <[hidden email]> wrote: No, it isn't. That is an invalid URL. Deleting the duplicate produces a valid page. _______________________________________________ dev mailing list [hidden email] http://mail.intermine.org/cgi-bin/mailman/listinfo/dev |
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My properties file looked like this: webapp.deploy.url=http://localhost:8080 webapp.path=flybasemine_test_1_0 webapp.baseurl=http://server:8080/flybasemine_test_1_0
Chomping baseurl fixed my problem! Has it been wrong this whole time or is this new to the beta? These settings have worked great up until now. Thanks! -JD On Thu, Jul 12, 2012 at 11:57 AM, <[hidden email]> wrote: Can you check that your webapp.path is correct? It's appending your path _______________________________________________ dev mailing list [hidden email] http://mail.intermine.org/cgi-bin/mailman/listinfo/dev |
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