I'm trying to use the allele_tower feature type to generate the histogram style image via a remote feature.
Previously I was doing this from a database and was getting good results via callbacks, but these don't work with remote features. I've tried to use the documentation of allele_tower but I'm not sure it is up to date.
Here is an example of my gff3 returned via a cgi script:
19 sub called 2109280 2109280 . + . Name=PD3849a;Alleles=A;Alleles=C;minor_allele=C;maf=0.16
19 sub called 2514984 2514984 . + . Name=PD3849a;Alleles=A;Alleles=G;minor_allele=G;maf=0.19
previously I would have gained an image like the one attached:
At the moment I seem to get a generic glyph If I define Alleles, minor_allele and maf as described here I get the following errors in my logs:
Alleles A does not have a value at GFF3 file line 2
Alleles C does not have a value at GFF3 file line 2
minor_allele C does not have a value at GFF3 file line 2
maf 0.2 does not have a value at GFF3 file line 2
Should I be able to get this to work, has anyone else?
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